TADB
Roseiflexus castenholzii DSM 13941 chromosome, complete genome. chromosome

# GENOME INFO
Genome size (bp) : 5723298
Link to NCBI Taxonomy Browser by Tax_id :383372
 
# TA INFO in replicon: NC_009767
#TypeToxinAntitoxinRegulatorLocationClassification(family/domain)
1 2 Rcas_0081 Rcas_0082 - 102424..102986 -/COG2442-PIN
2 2 Rcas_0088 Rcas_0089 - 110552..111191 -/HEPN-MNT
3 2 Rcas_0089 Rcas_0088 - 110552..111191 -/HEPN-MNT(antitoxin)
4 2 Rcas_0095 Rcas_0094 - 116430..117178 -/HEPN-MNT
5 2 Rcas_0537 Rcas_0538 - 715632..716225 -/COG2442-PIN
6 2 Rcas_0574 Rcas_0573 - 766690..767422 -/HEPN-MNT
7 2 Rcas_0576 Rcas_0575 - 767419..768166 -/HEPN-MNT
8 2 Rcas_0629 Rcas_0630 - 828865..829664 vapBC */COG2886-PIN
9 2 Rcas_0706 Rcas_0705 - 926584..927289 -/HEPN-MNT
10 2 Rcas_0763 Rcas_0762 - 997620..998421 -/HEPN-MNT
11 2 Rcas_0882 Rcas_0883 - 1155503..1156287 -/HEPN-MNT
12 2 Rcas_1007 Rcas_1008 - 1317209..1317678 hicBA */HicB-HicA
13 2 Rcas_1105 Rcas_1106 - 1431473..1432316 -/HEPN-MNT
14 2 Rcas_1166 Rcas_1167 - 1512926..1513556 vapBC */RHH-PIN
15 2 Rcas_1169 Rcas_1168 - 1514043..1514671 vapBC */PHD-PIN
16 2 Rcas_1207 Rcas_1208 - 1561196..1561932 -/HEPN-MNT
17 2 Rcas_1301 Rcas_1302 - 1679551..1680277 -/HEPN-MNT
18 2 Rcas_1516 Rcas_1517 - 1936683..1937259 mazEF */Xre-MazF
19 2 Rcas_1637 Rcas_1636 - 2114585..2115179 -/COG2442-PIN
20 2 Rcas_1920 Rcas_1919 - 2463095..2463812 -/HEPN-MNT
21 2 Rcas_2210 Rcas_2211 - 2854927..2855510 phd-doc */RHH-Fic
22 2 Rcas_2347 Rcas_2346 - 3031076..3031802 -/HEPN-MNT
23 2 Rcas_2350 Rcas_2349 - 3033190..3033937 vapBC */COG2886-PIN
24 2 Rcas_2416 Rcas_2417 - 3109254..3109920 -/HEPN-MNT
25 2 Rcas_2462 Rcas_2463 - 3162920..3163531 -/HEPN-MNT
26 2 Rcas_2468 Rcas_2467 - 3167709..3171166 -/-
27 2 Rcas_2777 Rcas_2776 - 3594715..3595319 -/COG2442-PIN
28 2 Rcas_3015 Rcas_3016 - 3910731..3911547 -/HEPN-MNT
29 2 Rcas_3226 Rcas_3227 - 4197455..4198154 -/HEPN-MNT
30 2 Rcas_3654 Rcas_3653 - 4782629..4783445 -/HEPN-MNT
31 2 Rcas_3687 Rcas_3686 - 4824131..4824738 vapBC */PHD-PIN
32 2 Rcas_3922 Rcas_3921 - 5120890..5121613 -/HEPN-MNT
33 2 Rcas_3960 Rcas_3961 - 5166899..5167541 -/HEPN-MNT
34 2 Rcas_4127 Rcas_4128 - 5342245..5343202 -/HEPN-MNT
35 2 Rcas_4188 Rcas_4189 - 5417054..5421651 -/Xre-COG2856
36 2 Rcas_4381 Rcas_4382 - 5634450..5635214 vapBC */Xre-PIN
37 2 Rcas_4442 Rcas_4443 - 5711107..5711852 vapBC */PHD-PIN

: TA pair identified by RASTA-Bacteria .
* : TA family predicted based on the TA domain pair using the relationship in Table S2

The further putative TA pairs predicted by RASTA-Bacteria .
#ToxinDomain1Score1AntitoxinDomain2Score2Replicon
1Rcas_1008COG159883.58Rcas_1007COG172484.1NC_009767
2Rcas_2977-66.32Rcas_2976PIN/COG184870.11NC_009767
3Rcas_0277-63.23Rcas_0278HTH_XRE/HTH_3/HTH_XRE/HipB72.39NC_009767
4Rcas_1676-60.94Rcas_1675VapC/PIN74.73NC_009767
5Rcas_2558-62.45Rcas_2559VapC77.46NC_009767
6Rcas_2884COG172480.77Rcas_2885COG1598/HTH_486.51NC_009767
7Rcas_1517-64.32Rcas_1516MazF/PemK74.04NC_009767
8Rcas_1471-64Rcas_1470StbD91.86NC_009767
9Rcas_2211-61.71Rcas_2210Doc/DOC76.69NC_009767
Note: The RASTA-Bacteria algorithm utilises rpsblast search and typical characteristics of TA loci, such as a two-gene, co-directed module coding for small proteins, to identify TA hits. RASTA-Bacteria TA pair hits with one score >70% and the other > 60% were recorded by TADB, this strict cut-off yields broadly reliable TA candidates.