TADB
Escherichia coli HS, complete genome. chromosome

# GENOME INFO
Genome size (bp) : 4643538
Link to NCBI Taxonomy Browser by Tax_id :331112
 
# TA INFO in replicon: NC_009800
#TypeToxinAntitoxinRegulatorLocationClassification(family/domain)
1 2 EcHS_A0253 EcHS_A0254 - 275519..276060 RelBE or parDE */RHH-RelE
2 2 EcHS_A0257 EcHS_A0256 - 277076..277703 hicBA */HicB-HicA
3 2 EcHS_A0501 EcHS_A0502 - 511857..512742 -/RHH-GNAT
4 2 EcHS_A0894 EcHS_A0893 - 904615..905320 relBE */Xre-RelE
5 2 EcHS_A1590 EcHS_A1591 - 1607677..1609283 hipBA */Xre-HipA
6 2 EcHS_A2155 EcHS_A2156 - 2135065..2135567 relBE or parDE */PHD-RelE
7 2 EcHS_A2926 EcHS_A2927 - 2928965..2929548 mazEF */AbrB-MazF
8 2 EcHS_A3200 EcHS_A3199 - 3212682..3213375 ygiT-mqsR (relBE) */Xre-YgiU
9 2 EcHS_A3265 EcHS_A3264 - 3277072..3277799 relBE */Xre-RelE
10 2 EcHS_A3320 EcHS_A3319 - 3325622..3326421 relBE */AbrB-RelE
11 2 EcHS_A4478 EcHS_A4477 - 4483642..4484237 mazEF */AbrB-MazF

: TA pair identified by RASTA-Bacteria .
* : TA family predicted based on the TA domain pair using the relationship in Table S2

The further putative TA pairs predicted by RASTA-Bacteria .
#ToxinDomain1Score1AntitoxinDomain2Score2Replicon
1EcHS_A2535HTH_XRE/HTH_XRE/HTH_382.13EcHS_A2536HTH_XRE/HTH_XRE/HTH_3/HipB82.89NC_009800
Note: The RASTA-Bacteria algorithm utilises rpsblast search and typical characteristics of TA loci, such as a two-gene, co-directed module coding for small proteins, to identify TA hits. RASTA-Bacteria TA pair hits with one score >70% and the other > 60% were recorded by TADB, this strict cut-off yields broadly reliable TA candidates.