TADB
Serratia proteamaculans 568 chromosome, complete genome. chromosome

# GENOME INFO
Genome size (bp) : 5448853
Link to NCBI Taxonomy Browser by Tax_id :399741
 
# TA INFO in replicon: NC_009832
#TypeToxinAntitoxinRegulatorLocationClassification(family/domain)
1 2 Spro_0051 Spro_0052 - 51859..52448 vapBC */RHH-PIN
2 2 Spro_0056 Spro_0055 - 56186..56711 RelBE or parDE */RHH-RelE
3 2 Spro_0103 Spro_0104 - 111485..112496 -/HEPN-MNT
4 2 Spro_0568 Spro_0567 - 629991..630592 hipBA */Xre-HipA
5 2 Spro_0571 Spro_0572 - 634208..636057 -/-
6 2 Spro_1038 Spro_1037 - 1139278..1139894 vapBC */PHD-PIN
7 2 Spro_1455 Spro_1454 - 1586966..1588056 -/Xre-GNAT
8 2 Spro_1555 Spro_1554 - 1694800..1695353 mazEF, ccd or relBE */RHH-MazF
9 2 Spro_1851 Spro_1852 - 2035409..2036016 relBE */Xre-RelE
10 2 Spro_1977 Spro_1976 - 2163774..2164423 -/ArsR-COG3832
11 2 Spro_2342 Spro_2343 - 2555329..2555917 relBE or parDE */PHD-RelE
12 2 Spro_2557 Spro_2556 - 2811638..2812522 -/ArsR-COG3832
13 2 Spro_3526 Spro_3527 - 3899598..3900065 RelBE or parDE */RHH-RelE
14 2 Spro_3558 Spro_3559 - 3935275..3935927 vapBC */AbrB-PIN
15 2 Spro_3691 Spro_3692 - 4082726..4084530 hipBA */Xre-HipA
16 2 Spro_3908 Spro_3907 - 4326554..4327157 -/RHH-COG2929
17 2 Spro_4161 Spro_4162 - 4615842..4617733 -/-
18 2 Spro_4208 Spro_4209 - 4666714..4667267 RelBE or parDE */RHH-RelE
19 2 Spro_4311 Spro_4310 - 4781418..4782939 hipBA */Xre-HipA
20 2 Spro_4313 Spro_4314 - 4784366..4784931 relBE */Xre-RelE
21 2 Spro_4386 Spro_4385 - 4851496..4852181 higBA (relBE) */COG5606-RelE
22 2 Spro_4586 Spro_4585 - 5059501..5060072 RelBE or parDE */RHH-RelE
23 2 Spro_4619 Spro_4618 - 5094664..5095403 vapBC */RHH-PIN

: TA pair identified by RASTA-Bacteria .
* : TA family predicted based on the TA domain pair using the relationship in Table S2

The further putative TA pairs predicted by RASTA-Bacteria .
#ToxinDomain1Score1AntitoxinDomain2Score2Replicon
1Spro_4209COG360991.9Spro_4208ParE/Plasmid_stabil92.47NC_009832
2Spro_0926HTH_491.76Spro_0925Plasmid_stabil/ParE92.39NC_009832
3Spro_4314VapI/HTH_3/HTH_XRE/HTH_XRE89.8Spro_4313HigB/Plasmid_killer92.13NC_009832
4Spro_0052HTH_485.98Spro_0051VapC/PIN/COG1848/COG411388.19NC_009832
5Spro_3692HTH_XRE/VapI/HTH_XRE/HTH_383.9Spro_3691HipA84.79NC_009832
6Spro_2932COG172481.26Spro_2933COG1598/HTH_4/COG360983.59NC_009832
7Spro_3527-68.29Spro_3526Plasmid_stabil/ParE79.98NC_009832
8Spro_4585-63.06Spro_4586Plasmid_stabil/ParE79.42NC_009832
9Spro_2036-67.97Spro_2035HTH_XRE/HTH_XRE/HTH_375.58NC_009832
10Spro_0814-63.61Spro_0813ParE/Plasmid_stabil/RelE74.5NC_009832
11Spro_3726-67.93Spro_3725HicB74.16NC_009832
12Spro_2343-65.68Spro_2342ParE73NC_009832
Note: The RASTA-Bacteria algorithm utilises rpsblast search and typical characteristics of TA loci, such as a two-gene, co-directed module coding for small proteins, to identify TA hits. RASTA-Bacteria TA pair hits with one score >70% and the other > 60% were recorded by TADB, this strict cut-off yields broadly reliable TA candidates.