TADB
Desulfococcus oleovorans Hxd3 chromosome, complete genome. chromosome

# GENOME INFO
Genome size (bp) : 3944167
Link to NCBI Taxonomy Browser by Tax_id :96561
 
# TA INFO in replicon: NC_009943
#TypeToxinAntitoxinRegulatorLocationClassification(family/domain)
1 2 Dole_0050 Dole_0051 - 59332..59939 relBE */Xre-RelE
2 2 Dole_0411 Dole_0410 - 471818..472393 vapBC */RHH-PIN
3 2 Dole_0442 Dole_0443 - 511044..511591 hicBA */HicB-HicA
4 2 Dole_0658 Dole_0659 - 783838..784346 -/RHH-COG2929
5 2 Dole_0896 Dole_0895 - 1047425..1048965 hipBA */Xre-HipA
6 2 Dole_0924 Dole_0923 - 1078759..1079483 vapBC */PHD-PIN
7 2 Dole_1386 Dole_1385 - 1647210..1647812 relBE */Xre-RelE
8 2 Dole_1698 Dole_1697 - 2030458..2031104 vapBC */AbrB-PIN
9 2 Dole_1700 Dole_1699 - 2031469..2031910 relBE */Xre-RelE
10 2 Dole_1760 Dole_1759 - 2119260..2119872 vapBC */PHD-PIN
11 2 Dole_1783 Dole_1782 - 2148031..2148701 vapBC */PHD-PIN
12 2 Dole_1812 Dole_1811 - 2193973..2194628 vapBC */RHH-PIN
13 2 Dole_1815 Dole_1814 - 2196430..2196962 -/COG2442-PIN
14 2 Dole_1840 Dole_1839 - 2226211..2226860 vapBC */RHH-PIN
15 2 Dole_1845 Dole_1844 - 2231955..2232661 vapBC */PHD-PIN
16 2 Dole_1902 Dole_1901 - 2306382..2307015 vapBC */PHD-PIN
17 2 Dole_2119 Dole_2120 - 2574519..2575093 relBE or parDE */PHD-RelE
18 2 Dole_2241 Dole_2242 - 2716097..2716728 relBE */Xre-RelE
19 2 Dole_2343 Dole_2342 - 2826090..2826709 vapBC */RHH-PIN
20 2 Dole_2607 Dole_2606 - 3150001..3150503 relBE or parDE */PHD-RelE
21 2 Dole_2637 Dole_2636 - 3180428..3182087 hipBA */Xre-HipA
22 2 Dole_2639 Dole_2640 - 3183555..3184047 -/RHH-COG2929
23 2 Dole_2751 Dole_2750 - 3318514..3319087 hicBA */HicB-HicA
24 2 Dole_2753 Dole_2752 - 3319575..3320140 -/RHH-COG2929
25 2 Dole_2890 Dole_2889 - 3472273..3472877 relBE */Xre-RelE
26 2 Dole_3135 Dole_3136 - 3764529..3765172 vapBC */RHH-PIN
27 2 Dole_3167 Dole_3166 - 3794140..3794771 vapBC */AbrB-PIN

: TA pair identified by RASTA-Bacteria .
* : TA family predicted based on the TA domain pair using the relationship in Table S2

The further putative TA pairs predicted by RASTA-Bacteria .
#ToxinDomain1Score1AntitoxinDomain2Score2Replicon
1Dole_1385VapI/HTH_XRE/HTH_XRE/HTH_3/COG549990.52Dole_1386HigB/Plasmid_killer94.11NC_009943
2Dole_2889VapI/HTH_XRE/HTH_3/HTH_XRE/COG549990.21Dole_2890Plasmid_killer/HigB93.68NC_009943
3Dole_2606StbD91.69Dole_2607RelE/HigB/Plasmid_killer92.41NC_009943
4Dole_2120StbD90.58Dole_2119Plasmid_stabil/ParE91.83NC_009943
5Dole_2341-62.19Dole_2342HTH_491.1NC_009943
6Dole_1811StbC/HicB87.85Dole_1812VapC/PIN/COG184889.15NC_009943
7Dole_1697AbrB/SpoVT_AbrB/MazE86.05Dole_1698COG1848/PIN/VapC88.07NC_009943
8Dole_2342HTH_491.1Dole_2343VapC/PIN/COG184887.81NC_009943
9Dole_0443HicB/HicB/COG159882.61Dole_0442COG172487.71NC_009943
10Dole_3166AbrB/SpoVT_AbrB/MazE85.42Dole_3167VapC/PIN87.67NC_009943
11Dole_1816-68.39Dole_1817RelE80.74NC_009943
12Dole_1759-66.22Dole_1760COG4113/PIN/COG1848/VapC74.87NC_009943
13Dole_0410-66.22Dole_0411PIN/VapC/COG1848/COG411373.16NC_009943
14Dole_1730-66.22Dole_1731ParE70.39NC_009943
15Dole_2889VapI/HTH_XRE/HTH_3/HTH_XRE/COG549990.21Dole_2888-60.58NC_009943
16Dole_0924PIN82.83Dole_0925-60.45NC_009943
Note: The RASTA-Bacteria algorithm utilises rpsblast search and typical characteristics of TA loci, such as a two-gene, co-directed module coding for small proteins, to identify TA hits. RASTA-Bacteria TA pair hits with one score >70% and the other > 60% were recorded by TADB, this strict cut-off yields broadly reliable TA candidates.