TADB
Methylobacterium extorquens PA1 chromosome, complete genome. chromosome

# GENOME INFO
Genome size (bp) : 5471154
Link to NCBI Taxonomy Browser by Tax_id :419610
 
# TA INFO in replicon: NC_010172
#TypeToxinAntitoxinRegulatorLocationClassification(family/domain)
1 2 Mext_0004 Mext_0005 - 4190..4833 vapBC */RHH-PIN
2 2 Mext_0338 Mext_0337 - 382921..383503 -/RHH-COG2929
3 2 Mext_1486 Mext_1487 - 1664373..1664976 -/Xre-COG2929
4 2 Mext_1502 Mext_1503 - 1680724..1681432 relBE */Xre-RelE
5 2 Mext_1517 Mext_1516 - 1697623..1698158 RelBE or parDE */RHH-RelE
6 2 Mext_1573 Mext_1572 - 1754567..1755274 relBE */Xre-RelE
7 2 Mext_1757 Mext_1758 - 1979713..1980280 -/RHH-COG2929
8 2 Mext_2930 Mext_2929 - 3273216..3273883 vapBC */PHD-PIN
9 2 Mext_2944 Mext_2943 - 3288984..3289590 relBE */Xre-RelE
10 2 Mext_3909 Mext_3908 - 4344413..4344944 RelBE or parDE */RHH-RelE
11 2 Mext_3973 Mext_3974 - 4416800..4417458 relBE */Xre-RelE
12 2 Mext_4242 Mext_4243 - 4720429..4721072 RelBE or parDE */RHH-RelE
13 2 Mext_4629 Mext_4630 - 5178024..5178666 RelBE or parDE */RHH-RelE

: TA pair identified by RASTA-Bacteria .
* : TA family predicted based on the TA domain pair using the relationship in Table S2

The further putative TA pairs predicted by RASTA-Bacteria .
#ToxinDomain1Score1AntitoxinDomain2Score2Replicon
1Mext_1516COG360964.63Mext_1517Plasmid_stabil/ParE93.15NC_010172
2Mext_2943HTH_XRE/HTH_XRE/HTH_3/HipB83.25Mext_2944RelE92.93NC_010172
3Mext_4630COG360984.74Mext_4629ParE/Plasmid_stabil86.79NC_010172
Note: The RASTA-Bacteria algorithm utilises rpsblast search and typical characteristics of TA loci, such as a two-gene, co-directed module coding for small proteins, to identify TA hits. RASTA-Bacteria TA pair hits with one score >70% and the other > 60% were recorded by TADB, this strict cut-off yields broadly reliable TA candidates.