TADB
Pseudomonas putida GB-1 chromosome, complete genome. chromosome

# GENOME INFO
Genome size (bp) : 6078430
Link to NCBI Taxonomy Browser by Tax_id :76869
 
# TA INFO in replicon: NC_010322
#TypeToxinAntitoxinRegulatorLocationClassification(family/domain)
1 2 PputGB1_2079 PputGB1_2078 - 2331057..2331940 -/COG5642-COG5654
2 2 PputGB1_3644 PputGB1_3643 - 4046322..4046951 relBE */Xre-RelE
3 2 PputGB1_3724 PputGB1_3723 - 4140681..4141818 vapBC */Xre-PIN
4 2 PputGB1_3777 PputGB1_3776 - 4201516..4202216 ygiT-mqsR (relBE) */Xre-YgiU
5 2 PputGB1_4036 PputGB1_4037 - 4487996..4488584 relBE */Xre-RelE

: TA pair identified by RASTA-Bacteria .
* : TA family predicted based on the TA domain pair using the relationship in Table S2

The further putative TA pairs predicted by RASTA-Bacteria .
#ToxinDomain1Score1AntitoxinDomain2Score2Replicon
1PputGB1_3643VapI/HTH_XRE/HTH_XRE/HTH_3/COG549992.45PputGB1_3644Plasmid_killer/HigB93.25NC_010322
2PputGB1_1307-61.52PputGB1_1308HTH_XRE/HTH_3/HTH_XRE/HipB72.24NC_010322
3PputGB1_1735-64.64PputGB1_1734HTH_XRE/HTH_XRE/HTH_371.3NC_010322
4PputGB1_4038-62.55PputGB1_4037HTH_3/HTH_XRE/HTH_XRE/HipB70.72NC_010322
5PputGB1_3674-61.55PputGB1_3673HTH_XRE/HTH_XRE/HTH_3/HipB70.27NC_010322
6PputGB1_1308HTH_XRE/HTH_3/HTH_XRE/HipB72.24PputGB1_1309-64.19NC_010322
7PputGB1_4037HTH_3/HTH_XRE/HTH_XRE/HipB70.72PputGB1_4036-63.03NC_010322
8PputGB1_3643VapI/HTH_XRE/HTH_XRE/HTH_3/COG549992.45PputGB1_3642-60.58NC_010322
Note: The RASTA-Bacteria algorithm utilises rpsblast search and typical characteristics of TA loci, such as a two-gene, co-directed module coding for small proteins, to identify TA hits. RASTA-Bacteria TA pair hits with one score >70% and the other > 60% were recorded by TADB, this strict cut-off yields broadly reliable TA candidates.