TADB
Escherichia coli ATCC 8739 chromosome, complete genome. chromosome

# GENOME INFO
Genome size (bp) : 4746218
Link to NCBI Taxonomy Browser by Tax_id :481805
 
# TA INFO in replicon: NC_010468
#TypeToxinAntitoxinRegulatorLocationClassification(family/domain)
1 2 EcolC_0351 EcolC_0350 - 403310..404069 -/YhfG-Fic
2 2 EcolC_0570 EcolC_0571 - 612864..613663 relBE */AbrB-RelE
3 2 EcolC_0617 EcolC_0618 - 661454..662181 relBE */Xre-RelE
4 2 EcolC_0675 EcolC_0676 - 726023..726716 ygiT-mqsR (relBE) */Xre-YgiU
5 2 EcolC_0930 EcolC_0929 - 1009367..1009950 mazEF */AbrB-MazF
6 2 EcolC_2072 EcolC_2071 - 2276932..2277458 RelBE or parDE */RHH-RelE
7 2 EcolC_2150 EcolC_2149 - 2351424..2353012 hipBA */Xre-HipA
8 2 EcolC_2222 EcolC_2221 - 2441417..2442055 hicBA */HicB-HicA
9 2 EcolC_2808 EcolC_2809 - 3069593..3070298 relBE */Xre-RelE
10 2 EcolC_3395 EcolC_3394 - 3712850..3713391 RelBE or parDE */RHH-RelE

: TA pair identified by RASTA-Bacteria .
* : TA family predicted based on the TA domain pair using the relationship in Table S2

The further putative TA pairs predicted by RASTA-Bacteria .
#ToxinDomain1Score1AntitoxinDomain2Score2Replicon
1EcolC_2057-67.97EcolC_2058HTH_XRE/HTH_3/HTH_XRE/HipB75.75NC_010468
2EcolC_2071RelB92.88EcolC_2072RelE93.46NC_010468
3EcolC_1274HTH_XRE/HTH_XRE/HTH_382.13EcolC_1273HTH_XRE/HTH_XRE/HTH_3/HipB82.89NC_010468
4EcolC_2072RelE93.46EcolC_2073-65.26NC_010468
Note: The RASTA-Bacteria algorithm utilises rpsblast search and typical characteristics of TA loci, such as a two-gene, co-directed module coding for small proteins, to identify TA hits. RASTA-Bacteria TA pair hits with one score >70% and the other > 60% were recorded by TADB, this strict cut-off yields broadly reliable TA candidates.