TADB
Escherichia coli str. K-12 substr. DH10B chromosome, complete chromosome

# GENOME INFO
Genome size (bp) : 4686137
Link to NCBI Taxonomy Browser by Tax_id :316385
 
# TA INFO in replicon: NC_010473
#TypeToxinAntitoxinRegulatorLocationClassification(family/domain)
1 2 ECDH10B_0207 ECDH10B_0208 - 220065..220606 RelBE or parDE */RHH-RelE
2 experimental 1 ECDH10B_1269 ECDH10B_1270 - 1308632..1308853 -/-
3 experimental 1 ECDH10B_1271 ECDH10B_1272 - 1309167..1309387 -/-
4 experimental 1 ECDH10B_1273 ECDH10B_1274 - 1309702..1309924 -/-
5 2 ECDH10B_1567 ECDH10B_1568 - 1597905..1598543 hicBA */HicB-HicA
6 2 ECDH10B_1638 ECDH10B_1639 - 1678503..1680091 hipBA */Xre-HipA
7 2 ECDH10B_1695 ECDH10B_1696 - 1732995..1733521 RelBE or parDE */RHH-RelE
8 2 ECDH10B_2164 ECDH10B_2165 - 2178243..2178745 relBE or parDE */PHD-RelE
9 2 ECDH10B_2949 ECDH10B_2950 - 3001320..3001903 mazEF */AbrB-MazF
10 2 ECDH10B_3196 ECDH10B_3195 - 3263618..3264311 ygiT-mqsR (relBE) */Xre-YgiU
11 2 ECDH10B_3258 ECDH10B_3257 - 3329495..3330222 relBE */Xre-RelE
12 2 ECDH10B_3303 ECDH10B_3302 - 3372769..3373568 relBE */AbrB-RelE
13 2 ECDH10B_3537 ECDH10B_3538 - 3586628..3587387 -/YhfG-Fic
14 experimental 1 ECDH10B_3716 ECDH10B_3717 - 3795748..3795967 -/-
15 2 ECDH10B_4420 ECDH10B_4419 - 4546832..4547427 mazEF */AbrB-MazF

experimental TA derived from experimental literature

: TA pair identified by RASTA-Bacteria .
* : TA family predicted based on the TA domain pair using the relationship in Table S2

The further putative TA pairs predicted by RASTA-Bacteria .
#ToxinDomain1Score1AntitoxinDomain2Score2Replicon
1ECDH10B_0215-64.1ECDH10B_0214StbD78.59NC_010473
2ECDH10B_1703-67.97ECDH10B_1702HTH_XRE/HTH_3/HTH_XRE/HipB75.75NC_010473
3ECDH10B_1330-60.1ECDH10B_1329HTH_3/HTH_XRE/HTH_XRE74NC_010473
4ECDH10B_1480-60.61ECDH10B_1479HTH_XRE/VapI71.57NC_010473
5ECDH10B_2562HTH_XRE/HTH_XRE/HTH_382.13ECDH10B_2563HTH_XRE/HTH_XRE/HTH_3/HipB82.89NC_010473
6ECDH10B_1694-65.26ECDH10B_1695RelE93.46NC_010473
Note: The RASTA-Bacteria algorithm utilises rpsblast search and typical characteristics of TA loci, such as a two-gene, co-directed module coding for small proteins, to identify TA hits. RASTA-Bacteria TA pair hits with one score >70% and the other > 60% were recorded by TADB, this strict cut-off yields broadly reliable TA candidates.