TADB
Escherichia coli SMS-3-5 chromosome, complete genome. chromosome

# GENOME INFO
Genome size (bp) : 5068389
Link to NCBI Taxonomy Browser by Tax_id :439855
 
# TA INFO in replicon: NC_010498
#TypeToxinAntitoxinRegulatorLocationClassification(family/domain)
1 2 EcSMS35_0443 EcSMS35_0442 - 454549..455065 RelBE or parDE */RHH-RelE
2 2 EcSMS35_0466 EcSMS35_0467 - 474095..474932 -/RHH-GNAT
3 2 EcSMS35_0822 EcSMS35_0821 - 824089..824810 RelBE or parDE */RHH-RelE
4 2 EcSMS35_0861 EcSMS35_0860 - 868411..869116 relBE */Xre-RelE
5 2 EcSMS35_0978 EcSMS35_0979 - 988633..989182 RelBE or parDE */RHH-RelE
6 2 EcSMS35_0998 EcSMS35_0997 - 1015243..1015744 higBA (relBE) */COG5606-RelE
7 2 EcSMS35_2044 EcSMS35_2043 - 2065466..2066250 -/RHH-GNAT
8 2 EcSMS35_2920 EcSMS35_2921 - 2994008..2994591 mazEF */AbrB-MazF
9 2 EcSMS35_3427 EcSMS35_3426 - 3507033..3507637 relBE */AbrB-RelE
10 2 EcSMS35_3683 EcSMS35_3684 - 3741417..3742089 relBE */Xre-RelE
11 2 EcSMS35_4026 EcSMS35_4027 - 4114612..4115272 relBE */Xre-RelE
12 2 EcSMS35_4703 EcSMS35_4702 - 4803153..4803748 mazEF */AbrB-MazF
13 2 EcSMS35_4716 EcSMS35_4715 - 4814570..4815092 RelBE or parDE */RHH-RelE

: TA pair identified by RASTA-Bacteria .
* : TA family predicted based on the TA domain pair using the relationship in Table S2

The further putative TA pairs predicted by RASTA-Bacteria .
#ToxinDomain1Score1AntitoxinDomain2Score2Replicon
1EcSMS35_4715RelB90.68EcSMS35_4716RelE93.46NC_010498
2EcSMS35_0442COG360987.17EcSMS35_0443ParE/Plasmid_stabil92.17NC_010498
3EcSMS35_0443ParE/Plasmid_stabil92.17EcSMS35_0444-62.42NC_010498
4EcSMS35_0979COG360989.59EcSMS35_0978ParE/Plasmid_stabil91.37NC_010498
5EcSMS35_2548HTH_XRE/HTH_XRE/HTH_382.13EcSMS35_2549HTH_XRE/HTH_XRE/HTH_3/HipB82.89NC_010498
6EcSMS35_0821-60.32EcSMS35_0822Plasmid_stabil/ParE/RelE78.76NC_010498
Note: The RASTA-Bacteria algorithm utilises rpsblast search and typical characteristics of TA loci, such as a two-gene, co-directed module coding for small proteins, to identify TA hits. RASTA-Bacteria TA pair hits with one score >70% and the other > 60% were recorded by TADB, this strict cut-off yields broadly reliable TA candidates.