TADB
Pseudomonas putida W619 chromosome, complete genome. chromosome

# GENOME INFO
Genome size (bp) : 5774330
Link to NCBI Taxonomy Browser by Tax_id :390235
 
# TA INFO in replicon: NC_010501
#TypeToxinAntitoxinRegulatorLocationClassification(family/domain)
1 2 PputW619_2025 PputW619_2024 - 2253183..2255555 -/Xre-Fic
2 2 PputW619_3529 PputW619_3528 - 3889629..3890329 ygiT-mqsR (relBE) */Xre-YgiU
3 2 PputW619_3823 PputW619_3822 - 4255930..4256440 -/RHH-COG2929
4 2 PputW619_3854 PputW619_3853 - 4289379..4289875 hicBA */HicB-HicA
5 2 PputW619_4418 PputW619_4419 - 4880205..4880827 mazEF */AbrB-MazF
6 2 PputW619_4624 PputW619_4623 - 5109600..5110240 vapBC */AbrB-PIN
7 2 PputW619_4958 PputW619_4957 - 5476465..5477180 RelBE or parDE */RHH-RelE

: TA pair identified by RASTA-Bacteria .
* : TA family predicted based on the TA domain pair using the relationship in Table S2

The further putative TA pairs predicted by RASTA-Bacteria .
#ToxinDomain1Score1AntitoxinDomain2Score2Replicon
1PputW619_4957-60.48PputW619_4958Plasmid_stabil/ParE79.49NC_010501
2PputW619_1267-64.19PputW619_1266HTH_XRE/HTH_3/HTH_XRE/HipB73.66NC_010501
3PputW619_1306-61.1PputW619_1307HTH_XRE/HTH_XRE70.79NC_010501
Note: The RASTA-Bacteria algorithm utilises rpsblast search and typical characteristics of TA loci, such as a two-gene, co-directed module coding for small proteins, to identify TA hits. RASTA-Bacteria TA pair hits with one score >70% and the other > 60% were recorded by TADB, this strict cut-off yields broadly reliable TA candidates.