TADB
Xylella fastidiosa M12 chromosome, complete genome. chromosome

# GENOME INFO
Genome size (bp) : 2475130
Link to NCBI Taxonomy Browser by Tax_id :405440
 
# TA INFO in replicon: NC_010513
#TypeToxinAntitoxinRegulatorLocationClassification(family/domain)
1 2 Xfasm12_0256 Xfasm12_0255 - 300147..300777 vapBC */AbrB-PIN
2 2 Xfasm12_0404 Xfasm12_0403 - 460005..460642 relBE */Xre-RelE
3 2 Xfasm12_0422 Xfasm12_0421 - 472331..472917 hicBA */HicB-HicA
4 2 Xfasm12_0665 Xfasm12_0664 - 712709..713273 -/RHH-COG2929
5 2 Xfasm12_0945 Xfasm12_0946 - 1024639..1025393 -/RHH-GNAT
6 2 Xfasm12_1143 Xfasm12_1142 - 1220731..1221368 relBE */Xre-RelE
7 2 Xfasm12_1292 Xfasm12_1291 - 1357929..1358469 RelBE or parDE */RHH-RelE
8 2 Xfasm12_1331 Xfasm12_1330 - 1387526..1388111 -/RHH-COG2929
9 2 Xfasm12_1561 Xfasm12_1560 - 1629482..1630004 RelBE or parDE */RHH-RelE
10 2 Xfasm12_2302 Xfasm12_2303 - 2452811..2453494 vapBC */RHH-PIN

: TA pair identified by RASTA-Bacteria .
* : TA family predicted based on the TA domain pair using the relationship in Table S2

The further putative TA pairs predicted by RASTA-Bacteria .
#ToxinDomain1Score1AntitoxinDomain2Score2Replicon
1Xfasm12_1142VapI/HTH_XRE/HTH_XRE/HTH_390.22Xfasm12_1141VapI/HTH_XRE/HTH_390.41NC_010513
2Xfasm12_0403VapI/HTH_XRE/HTH_XRE/HTH_390.22Xfasm12_0402VapI/HTH_XRE/HTH_390.41NC_010513
3Xfasm12_1559-63.84Xfasm12_1558PIN/COG1848/VapC70.74NC_010513
4Xfasm12_1291HTH_486.98Xfasm12_1292RelE93.84NC_010513
5Xfasm12_1143Plasmid_killer/HigB93.36Xfasm12_1144VapI/HTH_XRE/HTH_XRE/HTH_3/COG549993.45NC_010513
6Xfasm12_0404Plasmid_killer/HigB93.36Xfasm12_0405VapI/HTH_XRE/HTH_XRE/HTH_3/COG549993.45NC_010513
Note: The RASTA-Bacteria algorithm utilises rpsblast search and typical characteristics of TA loci, such as a two-gene, co-directed module coding for small proteins, to identify TA hits. RASTA-Bacteria TA pair hits with one score >70% and the other > 60% were recorded by TADB, this strict cut-off yields broadly reliable TA candidates.