TADB
Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)

# GENOME INFO
Genome size (bp) : 3599677
Link to NCBI Taxonomy Browser by Tax_id :456481
 
# TA INFO in replicon: NC_010602
#TypeToxinAntitoxinRegulatorLocationClassification(family/domain)
1 2 LEPBI_I0211 LEPBI_I0212 - 204108..204912 -/ArsR-COG3832
2 2 LEPBI_I0431 LEPBI_I0430 - 423243..424035 -/ArsR-COG3832
3 2 LEPBI_I0641 LEPBI_I0642 - 647104..647683 -/HEPN-MNT
4 2 LEPBI_I0741 LEPBI_I0740 - 757029..757594 mazEF */AbrB-MazF
5 2 LEPBI_I2199 LEPBI_I2200 - 2284740..2285434 relBE */Xre-RelE
6 2 LEPBI_I2204 LEPBI_I2203 - 2287093..2287774 vapBC */COG2886-PIN
7 2 LEPBI_I2217 LEPBI_I2218 - 2301676..2302337 relBE */Xre-RelE
8 2 LEPBI_I2230 LEPBI_I2231 - 2312122..2312758 relBE */Xre-RelE
9 2 LEPBI_I2240 LEPBI_I2239 - 2317304..2317968 vapBC */RHH-PIN
10 2 LEPBI_I2244 LEPBI_I2243 - 2320539..2321150 phd-doc */AbrB-Fic
11 2 LEPBI_I2248 LEPBI_I2247 - 2323392..2324053 vapBC */RHH-PIN
12 2 LEPBI_I2250 LEPBI_I2249 - 2324336..2324964 vapBC */AbrB-PIN
13 2 LEPBI_I2251 LEPBI_I2252 - 2325235..2325895 relBE */Xre-RelE
14 2 LEPBI_I2346 LEPBI_I2345 - 2417379..2418114 vapBC */RHH-PIN
15 2 LEPBI_I2884 LEPBI_I2885 - 2976955..2977817 -/ArsR-COG3832
16 2 LEPBI_I2912 LEPBI_I2913 - 3011553..3012207 vapBC */RHH-PIN
17 2 LEPBI_I3058 LEPBI_I3057 - 3169797..3170385 -/RHH-COG2929
18 2 LEPBI_I3066 LEPBI_I3067 - 3177800..3178379 mazEF, ccd or relBE */RHH-MazF
19 2 LEPBI_I3344 LEPBI_I3345 - 3450975..3452289 -/ArsR-COG3832
20 2 LEPBI_I3399 LEPBI_I3400 - 3522044..3522675 vapBC */AbrB-PIN

: TA pair identified by RASTA-Bacteria .
* : TA family predicted based on the TA domain pair using the relationship in Table S2

The further putative TA pairs predicted by RASTA-Bacteria .
#ToxinDomain1Score1AntitoxinDomain2Score2Replicon
1LEPBI_I2231VapI/HTH_XRE/HTH_XRE/HTH_388.67LEPBI_I2230HigB/Plasmid_killer93.1NC_010602
2LEPBI_I2370-63.9LEPBI_I2371HTH_477.96NC_010602
3LEPBI_I2918-63LEPBI_I2917VapC/PIN/COG4113/COG184873.17NC_010602
4LEPBI_I2239-67.1LEPBI_I2240COG184871.72NC_010602
5LEPBI_I2227-62.64LEPBI_I2228VapC/PIN/COG1848/COG411373.1NC_010602
6LEPBI_I2345StbC85.55LEPBI_I2346VapC/PIN89.1NC_010602
Note: The RASTA-Bacteria algorithm utilises rpsblast search and typical characteristics of TA loci, such as a two-gene, co-directed module coding for small proteins, to identify TA hits. RASTA-Bacteria TA pair hits with one score >70% and the other > 60% were recorded by TADB, this strict cut-off yields broadly reliable TA candidates.