TADB
Methylobacterium populi BJ001 chromosome, complete genome. chromosome

# GENOME INFO
Genome size (bp) : 5800441
Link to NCBI Taxonomy Browser by Tax_id :441620
 
# TA INFO in replicon: NC_010725
#TypeToxinAntitoxinRegulatorLocationClassification(family/domain)
1 2 Mpop_0410 Mpop_0409 - 440066..440715 -/HEPN-MNT
2 2 Mpop_0417 Mpop_0416 - 446947..447529 -/RHH-COG2929
3 2 Mpop_0593 Mpop_0594 - 642653..643217 RelBE or parDE */RHH-RelE
4 2 Mpop_0728 Mpop_0727 - 784215..784894 vapBC */RHH-PIN
5 2 Mpop_0767 Mpop_0766 - 825327..826071 relBE */Xre-RelE
6 2 Mpop_0785 Mpop_0786 - 844617..845266 mazEF */AbrB-MazF
7 2 Mpop_0844 Mpop_0845 - 894829..895673 relBE */AbrB-RelE
8 2 Mpop_0927 Mpop_0928 - 979022..979656 -/Xre-COG2929
9 2 Mpop_1184 Mpop_1185 - 1264144..1264745 -/RHH-COG2929
10 2 Mpop_1352 Mpop_1351 - 1467058..1467914 -/RHH-GNAT
11 2 Mpop_1379 Mpop_1378 - 1494602..1495246 vapBC */RHH-PIN
12 2 Mpop_1406 Mpop_1405 - 1526430..1527064 vapBC */RHH-PIN
13 2 Mpop_1537 Mpop_1536 - 1652802..1653369 -/RHH-COG2929
14 2 Mpop_1591 Mpop_1590 - 1718523..1719180 relBE */Xre-RelE
15 2 Mpop_1726 Mpop_1727 - 1859192..1860213 -/COG5642-COG5654
16 2 Mpop_1733 Mpop_1732 - 1867295..1867965 -/HEPN-MNT
17 2 Mpop_2091 Mpop_2092 - 2252423..2253528 -/COG2442-PIN
18 2 Mpop_2928 Mpop_2927 - 3150097..3150702 relBE */Xre-RelE
19 2 Mpop_3051 Mpop_3050 - 3278146..3278813 vapBC */PHD-PIN
20 2 Mpop_3163 Mpop_3164 - 3397787..3398460 vapBC */PHD-PIN
21 2 Mpop_3175 Mpop_3174 - 3409669..3410255 relBE */Xre-RelE
22 2 Mpop_3252 Mpop_3251 - 3476116..3477176 -/COG2442-PIN
23 2 Mpop_3315 Mpop_3314 - 3541151..3541824 vapBC */PHD-PIN
24 2 Mpop_3483 Mpop_3482 - 3713046..3713782 relBE */Xre-RelE
25 2 Mpop_3717 Mpop_3718 - 3965622..3967263 hipBA */Xre-HipA
26 2 Mpop_3850 Mpop_3849 - 4096270..4097306 -/COG2442-PIN
27 2 Mpop_3936 Mpop_3935 - 4188563..4189244 relBE */Xre-RelE
28 2 Mpop_4047 Mpop_4046 - 4319855..4321299 mazEF */Xre-MazF
29 2 Mpop_4280 Mpop_4279 - 4565579..4566186 -/COG2442-PIN
30 2 Mpop_4311 Mpop_4312 - 4594116..4594806 relBE */Xre-RelE
31 2 Mpop_4381 Mpop_4380 - 4674126..4674657 RelBE or parDE */RHH-RelE
32 2 Mpop_4453 Mpop_4454 - 4749757..4750388 relBE */Xre-RelE
33 2 Mpop_4539 Mpop_4538 - 4846236..4846867 vapBC */PHD-PIN
34 2 Mpop_4581 Mpop_4582 - 4890105..4890691 relBE */Xre-RelE
35 2 Mpop_4743 Mpop_4742 - 5068109..5068765 relBE */Xre-RelE
36 2 Mpop_4762 Mpop_4763 - 5086510..5087153 RelBE or parDE */RHH-RelE
37 2 Mpop_4792 Mpop_4793 - 5120640..5121216 RelBE or parDE */RHH-RelE
38 2 Mpop_4944 Mpop_4945 - 5283908..5284559 -/COG2442-PIN
39 2 Mpop_5138 Mpop_5139 - 5505324..5505860 RelBE or parDE */RHH-RelE
40 2 Mpop_5181 Mpop_5182 - 5550106..5550676 RelBE or parDE */RHH-RelE
41 2 Mpop_5215 Mpop_5216 - 5582304..5582934 relBE */Xre-RelE
42 2 Mpop_5274 Mpop_5275 - 5640109..5640869 -/HEPN-MNT
43 2 Mpop_5408 Mpop_5407 - 5785959..5786538 mazEF */AbrB-MazF

: TA pair identified by RASTA-Bacteria .
* : TA family predicted based on the TA domain pair using the relationship in Table S2

The further putative TA pairs predicted by RASTA-Bacteria .
#ToxinDomain1Score1AntitoxinDomain2Score2Replicon
1Mpop_3174HTH_XRE/HTH_3/HTH_XRE85.55Mpop_3175RelE88.89NC_010725
2Mpop_3935VapI/HTH_XRE/HTH_XRE/HTH_390.78Mpop_3936HigB/Plasmid_killer91.64NC_010725
3Mpop_5216HTH_3/HTH_XRE/HTH_XRE/HipB83.43Mpop_5215RelE85.19NC_010725
4Mpop_2728-64.19Mpop_2729HTH_XRE/HTH_XRE/HTH_3/HipB74.3NC_010725
5Mpop_5139COG360991.08Mpop_5138ParE/Plasmid_stabil93.05NC_010725
6Mpop_2878-61.1Mpop_2879Doc/DOC76.44NC_010725
7Mpop_0607-60.77Mpop_0606ParE/Plasmid_stabil75.01NC_010725
8Mpop_5182COG360986.76Mpop_5181ParE/Plasmid_stabil90.22NC_010725
9Mpop_5169-63.84Mpop_5170VapC/PIN/COG184873.41NC_010725
10Mpop_1378-66.22Mpop_1379PIN72.81NC_010725
11Mpop_3935VapI/HTH_XRE/HTH_XRE/HTH_390.78Mpop_3934-68.29NC_010725
12Mpop_2728-64.19Mpop_2727HTH_XRE/HTH_XRE/HTH_3/HipB71.42NC_010725
13Mpop_0594COG360990.63Mpop_0593ParE/Plasmid_stabil90.68NC_010725
14Mpop_4793COG360962.97Mpop_4792ParE/Plasmid_stabil77.24NC_010725
15Mpop_4742HTH_XRE/HTH_XRE/HTH_3/HipB/VapI87.18Mpop_4743RelE92.68NC_010725
Note: The RASTA-Bacteria algorithm utilises rpsblast search and typical characteristics of TA loci, such as a two-gene, co-directed module coding for small proteins, to identify TA hits. RASTA-Bacteria TA pair hits with one score >70% and the other > 60% were recorded by TADB, this strict cut-off yields broadly reliable TA candidates.