TADB
Chlorobium limicola DSM 245 chromosome, complete genome. chromosome

# GENOME INFO
Genome size (bp) : 2763181
Link to NCBI Taxonomy Browser by Tax_id :290315
 
# TA INFO in replicon: NC_010803
#TypeToxinAntitoxinRegulatorLocationClassification(family/domain)
1 2 Clim_0066 Clim_0067 - 71112..71515 vapBC */AbrB-PIN
2 2 Clim_0106 Clim_0107 - 118357..119434 -/Xre-COG5654
3 2 Clim_0109 Clim_0110 - 119993..121644 hipBA */Xre-HipA
4 2 Clim_0113 Clim_0112 - 121989..122536 RelBE or parDE */RHH-RelE
5 2 Clim_0211 Clim_0212 - 236513..237046 hipBA */Xre-HipA
6 2 Clim_0233 Clim_0232 - 260724..261472 -/HEPN-MNT
7 2 Clim_0237 Clim_0236 - 262989..264564 hipBA */Xre-HipA
8 2 Clim_0589 Clim_0590 - 660454..660913 relBE */Xre-RelE
9 2 Clim_0656 Clim_0655 - 729950..730569 relBE */Xre-RelE
10 2 Clim_0658 Clim_0659 - 731102..731715 vapBC */AbrB-PIN
11 2 Clim_0726 Clim_0727 - 796753..797273 relBE or parDE */PHD-RelE
12 2 Clim_0935 Clim_0934 - 1023750..1024927 -/-
13 2 Clim_0997 Clim_0998 - 1087914..1088927 relBE */Xre-RelE
14 2 Clim_1299 Clim_1300 - 1398995..1399559 RelBE or parDE */RHH-RelE
15 2 Clim_1327 Clim_1326 - 1431720..1432165 mazEF, ccd or relBE */RHH-MazF
16 2 Clim_1336 Clim_1337 - 1436612..1437368 ygiT-mqsR (relBE) */Xre-YgiU
17 2 Clim_1338 Clim_1339 - 1437546..1438038 RelBE or parDE */RHH-RelE
18 2 Clim_1344 Clim_1343 - 1439021..1439646 RelBE or parDE */RHH-RelE
19 2 Clim_1345 Clim_1346 - 1439785..1440329 mazEF */XF1863-MazF
20 2 Clim_1348 Clim_1347 - 1440927..1441492 mazEF, ccd or relBE */RHH-MazF
21 2 Clim_1457 Clim_1458 - 1563525..1564153 vapBC */AbrB-PIN
22 2 Clim_1471 Clim_1470 - 1577373..1578196 -/HEPN-MNT
23 2 Clim_1481 Clim_1480 - 1586872..1587764 relBE */Xre-RelE
24 2 Clim_1931 Clim_1932 - 2137893..2139421 -/-
25 2 Clim_2032 Clim_2031 - 2244906..2245470 RelBE or parDE */RHH-RelE
26 2 Clim_2101 Clim_2100 - 2315415..2316276 -/RHH-GNAT
27 2 Clim_2109 Clim_2110 - 2331012..2331625 phd-doc */AbrB-Fic
28 2 Clim_2242 Clim_2243 - 2469317..2470362 -/Xre-Fic

: TA pair identified by RASTA-Bacteria .
- : unclassified

The further putative TA pairs predicted by RASTA-Bacteria .
#ToxinDomain1Score1AntitoxinDomain2Score2Replicon
1Clim_0236HTH_XRE/HTH_XRE/HTH_3/HipB83.44Clim_0237HipA83.51NC_010803
2Clim_0112-63.55Clim_0113Plasmid_stabil/ParE79.11NC_010803
3Clim_0236HTH_XRE/HTH_XRE/HTH_3/HipB83.44Clim_0235-60.1NC_010803
4Clim_1480HTH_XRE/HTH_3/HTH_XRE/VapI/HipB74.08Clim_1481-60.48NC_010803
5Clim_1326-68.29Clim_1327PemK/MazF78.09NC_010803
6Clim_2032ParE/Plasmid_stabil91.53Clim_2033-68.35NC_010803
7Clim_1346-65.71Clim_1345MazF/PemK74.81NC_010803
8Clim_1347-67.97Clim_1348PemK/MazF75.57NC_010803
9Clim_1343-62.74Clim_1344Plasmid_stabil/ParE/RelE77.09NC_010803
10Clim_1302-62.19Clim_1303HTH_XRE/HTH_XRE74.44NC_010803
11Clim_1479-61Clim_1480HTH_XRE/HTH_3/HTH_XRE/VapI/HipB74.08NC_010803
12Clim_0727-67.71Clim_0726Plasmid_killer/HigB/RelE74.23NC_010803
13Clim_1339HTH_490.04Clim_1338RelE94.37NC_010803
Note: The RASTA-Bacteria algorithm utilises rpsblast search and typical characteristics of TA loci, such as a two-gene, co-directed module coding for small proteins, to identify TA hits. RASTA-Bacteria TA pair hits with one score >70% and the other > 60% were recorded by TADB, this strict cut-off yields broadly reliable TA candidates.