TADB
Chlorobium phaeobacteroides BS1 chromosome, complete genome. chromosome

# GENOME INFO
Genome size (bp) : 2736403
Link to NCBI Taxonomy Browser by Tax_id :331678
 
# TA INFO in replicon: NC_010831
#TypeToxinAntitoxinRegulatorLocationClassification(family/domain)
1 2 Cphamn1_0056 Cphamn1_0057 - 57126..57691 -/COG2442-PIN
2 2 Cphamn1_0069 Cphamn1_0068 - 64936..65858 -/HEPN-MNT
3 2 Cphamn1_0141 Cphamn1_0140 - 135289..135923 RelBE or parDE */RHH-RelE
4 2 Cphamn1_0232 Cphamn1_0231 - 220811..221418 vapBC */RHH-PIN
5 2 Cphamn1_0244 Cphamn1_0245 - 237452..238265 -/HEPN-MNT
6 2 Cphamn1_0556 Cphamn1_0557 - 590604..591234 relBE */Xre-RelE
7 2 Cphamn1_0570 Cphamn1_0571 - 599502..600313 relBE or parDE */PHD-RelE
8 2 Cphamn1_0721 Cphamn1_0720 - 764197..764731 RelBE or parDE */RHH-RelE
9 2 Cphamn1_0724 Cphamn1_0723 - 766493..767160 relBE */Xre-RelE
10 2 Cphamn1_0728 Cphamn1_0729 - 770459..771087 vapBC */AbrB-PIN
11 2 Cphamn1_0733 Cphamn1_0732 - 773275..773807 mazEF */XF1863-MazF
12 2 Cphamn1_0743 Cphamn1_0742 - 784311..785356 -/Xre-Fic
13 2 Cphamn1_0806 Cphamn1_0805 - 868698..869245 RelBE or parDE */RHH-RelE
14 2 Cphamn1_0869 Cphamn1_0870 - 937914..938560 relBE */Xre-RelE
15 2 Cphamn1_0871 Cphamn1_0872 - 939232..939862 -/HEPN-MNT
16 2 Cphamn1_0888 Cphamn1_0889 - 961144..962105 relBE */Xre-RelE
17 2 Cphamn1_0890 Cphamn1_0891 - 962239..965047 phd-doc */AbrB-Fic
18 2 Cphamn1_1052 Cphamn1_1051 - 1141731..1142325 -/RHH-COG2929
19 2 Cphamn1_1054 Cphamn1_1055 - 1143027..1143547 vapBC */RHH-PIN
20 2 Cphamn1_1153 Cphamn1_1154 - 1243682..1244339 vapBC */AbrB-PIN
21 2 Cphamn1_1161 Cphamn1_1160 - 1250190..1250748 RelBE or parDE */RHH-RelE
22 2 Cphamn1_1260 Cphamn1_1259 - 1367018..1367507 RelBE or parDE */RHH-RelE
23 2 Cphamn1_1262 Cphamn1_1261 - 1368170..1368747 -/RHH-COG2929
24 2 Cphamn1_1313 Cphamn1_1314 - 1426207..1426823 phd-doc */AbrB-Fic
25 2 Cphamn1_1401 Cphamn1_1402 - 1517539..1518122 vapBC */AbrB-PIN
26 2 Cphamn1_1668 Cphamn1_1669 - 1802120..1802727 relBE or parDE */PHD-RelE
27 2 Cphamn1_1904 Cphamn1_1905 - 2071375..2071981 vapBC */Xre-PIN
28 2 Cphamn1_1936 Cphamn1_1937 - 2100444..2100892 hicBA */HicB-HicA
29 2 Cphamn1_1946 Cphamn1_1945 - 2104529..2104991 hicBA */HicB-HicA
30 2 Cphamn1_1948 Cphamn1_1947 - 2105200..2105818 -/HEPN-MNT
31 2 Cphamn1_1951 Cphamn1_1952 - 2107253..2107701 hicBA */HicB-HicA
32 2 Cphamn1_1958 Cphamn1_1959 - 2110066..2110684 -/HicB-HicA(antitoxin)
33 2 Cphamn1_1959 Cphamn1_1958 - 2110066..2110684 -/HEPN-MNT
34 2 Cphamn1_1961 Cphamn1_1962 - 2111624..2112282 vapBC */RHH-PIN
35 2 Cphamn1_1964 Cphamn1_1963 - 2112490..2113386 vapBC */Xre-PIN
36 2 Cphamn1_1966 Cphamn1_1965 - 2113383..2114162 vapBC */RHH-PIN
37 2 Cphamn1_1972 Cphamn1_1971 - 2117131..2117921 -/HEPN-MNT
38 2 Cphamn1_2139 Cphamn1_2140 - 2315339..2315871 RelBE or parDE */RHH-RelE
39 2 Cphamn1_2167 Cphamn1_2168 - 2347025..2347558 hipBA */Xre-HipA
40 2 Cphamn1_2220 Cphamn1_2221 - 2406471..2407096 vapBC */PHD-PIN
41 2 Cphamn1_2256 Cphamn1_2257 - 2441005..2441699 RelBE or parDE */RHH-RelE
42 2 Cphamn1_2320 Cphamn1_2321 - 2493218..2494020 -/RHH-GNAT
43 2 Cphamn1_2339 Cphamn1_2340 - 2511144..2511814 vapBC */PHD-PIN

: TA pair identified by RASTA-Bacteria .
* : TA family predicted based on the TA domain pair using the relationship in Table S2

The further putative TA pairs predicted by RASTA-Bacteria .
#ToxinDomain1Score1AntitoxinDomain2Score2Replicon
1Cphamn1_2492VapI/HTH_XRE/HTH_3/HTH_XRE/COG549964.13Cphamn1_2493HigB/Plasmid_killer87.74NC_010831
2Cphamn1_1937COG159884.32Cphamn1_1936COG172484.32NC_010831
3Cphamn1_0805-63.84Cphamn1_0806Plasmid_stabil/ParE79.1NC_010831
4Cphamn1_0140-61.52Cphamn1_0141Plasmid_stabil/ParE79.21NC_010831
5Cphamn1_1314MazE/SpoVT_AbrB/AbrB89.5Cphamn1_1313Doc/DOC89.86NC_010831
6Cphamn1_1572-65.58Cphamn1_1571ParE/Plasmid_stabil76.76NC_010831
7Cphamn1_0569-67.9Cphamn1_0570HTH_XRE/HTH_XRE/HTH_374.23NC_010831
8Cphamn1_1058-64.87Cphamn1_1059ParE78.82NC_010831
9Cphamn1_1952COG159884.32Cphamn1_1951COG172484.32NC_010831
10Cphamn1_2168HTH_XRE/HTH_XRE/HTH_3/HipB73.09Cphamn1_2169-66.68NC_010831
11Cphamn1_2418-61.1Cphamn1_2419HTH_XRE/HTH_3/HTH_XRE/VapI/HipB/COG549974.03NC_010831
12Cphamn1_0057-64.32Cphamn1_0058VapC/PIN/COG184873.26NC_010831
13Cphamn1_1905-64.87Cphamn1_1904VapC/PIN/COG184876.13NC_010831
14Cphamn1_1160COG360986.1Cphamn1_1161ParE/Plasmid_stabil89.09NC_010831
15Cphamn1_0720HTH_492.15Cphamn1_0721Plasmid_stabil/ParE92.42NC_010831
16Cphamn1_0231-62Cphamn1_0232VapC/PIN/COG184874.83NC_010831
17Cphamn1_1962-62.42Cphamn1_1961COG4113/PIN73.94NC_010831
18Cphamn1_0732-67.71Cphamn1_0733MazF/PemK75.04NC_010831
19Cphamn1_1964VapC/PIN86.97Cphamn1_1965StbC87.64NC_010831
Note: The RASTA-Bacteria algorithm utilises rpsblast search and typical characteristics of TA loci, such as a two-gene, co-directed module coding for small proteins, to identify TA hits. RASTA-Bacteria TA pair hits with one score >70% and the other > 60% were recorded by TADB, this strict cut-off yields broadly reliable TA candidates.