TADB
Leptospira biflexa serovar Patoc strain Patoc 1 (Ames) chromosome chromosome

# GENOME INFO
Genome size (bp) : 3603977
Link to NCBI Taxonomy Browser by Tax_id :355278
 
# TA INFO in replicon: NC_010842
#TypeToxinAntitoxinRegulatorLocationClassification(family/domain)
1 2 LBF_0206 LBF_0207 - 208150..208954 -/ArsR-COG3832
2 2 LBF_0412 LBF_0411 - 428813..429605 -/ArsR-COG3832
3 2 LBF_0418 LBF_0417 - 432830..433456 vapBC */PHD-PIN
4 2 LBF_0616 LBF_0617 - 652599..653253 -/HEPN-MNT
5 2 LBF_0718 LBF_0717 - 762599..763164 mazEF */AbrB-MazF
6 2 LBF_2137 LBF_2138 - 2290126..2290820 relBE */Xre-RelE
7 2 LBF_2142 LBF_2141 - 2292479..2293160 vapBC */COG2886-PIN
8 2 LBF_2155 LBF_2156 - 2307062..2307723 relBE */Xre-RelE
9 2 LBF_2169 LBF_2170 - 2317508..2318144 relBE */Xre-RelE
10 2 LBF_2175 LBF_2174 - 2322690..2323354 vapBC */RHH-PIN
11 2 LBF_2179 LBF_2178 - 2325925..2326536 phd-doc */AbrB-Fic
12 2 LBF_2183 LBF_2182 - 2328778..2329439 vapBC */RHH-PIN
13 2 LBF_2185 LBF_2184 - 2329722..2330350 vapBC */AbrB-PIN
14 2 LBF_2186 LBF_2187 - 2330621..2331281 relBE */Xre-RelE
15 2 LBF_2191 LBF_2192 - 2334551..2335149 relBE */Xre-RelE
16 2 LBF_2195 LBF_2196 - 2336628..2337332 relBE */Xre-RelE
17 2 LBF_2276 LBF_2275 - 2422710..2423445 vapBC */RHH-PIN
18 2 LBF_2785 LBF_2786 - 2985341..2986203 -/ArsR-COG3832
19 2 LBF_2813 LBF_2814 - 3019939..3020593 vapBC */RHH-PIN
20 2 LBF_2958 LBF_2959 - 3186177..3186756 mazEF, ccd or relBE */RHH-MazF
21 2 LBF_3230 LBF_3231 - 3459352..3460666 -/ArsR-COG3832
22 2 LBF_3285 LBF_3286 - 3530394..3531025 vapBC */AbrB-PIN

: TA pair identified by RASTA-Bacteria .
* : TA family predicted based on the TA domain pair using the relationship in Table S2

The further putative TA pairs predicted by RASTA-Bacteria .
#ToxinDomain1Score1AntitoxinDomain2Score2Replicon
1LBF_2170VapI/HTH_XRE/HTH_XRE/HTH_388.67LBF_2169HigB/Plasmid_killer93.1NC_010842
2LBF_2192VapI/HTH_XRE/HTH_3/HTH_XRE/COG549991.29LBF_2191HigB/Plasmid_killer93.1NC_010842
3LBF_2275StbC85.55LBF_2276VapC/PIN89.1NC_010842
4LBF_2302-63.9LBF_2303HTH_477.96NC_010842
5LBF_2819-63LBF_2818VapC/PIN/COG4113/COG184873.17NC_010842
6LBF_2165-62.64LBF_2166VapC/PIN/COG1848/COG411373.1NC_010842
7LBF_2174-67.1LBF_2175COG184871.72NC_010842
Note: The RASTA-Bacteria algorithm utilises rpsblast search and typical characteristics of TA loci, such as a two-gene, co-directed module coding for small proteins, to identify TA hits. RASTA-Bacteria TA pair hits with one score >70% and the other > 60% were recorded by TADB, this strict cut-off yields broadly reliable TA candidates.