TADB
Rhizobium etli CIAT 652 chromosome, complete genome. chromosome

# GENOME INFO
Genome size (bp) : 4513324
Link to NCBI Taxonomy Browser by Tax_id :491916
 
# TA INFO in replicon: NC_010994
#TypeToxinAntitoxinRegulatorLocationClassification(family/domain)
1 2 RHECIAT_CH0000281 RHECIAT_CH0000282 - 296590..297119 mazEF, ccd or relBE */RHH-MazF
2 2 RHECIAT_CH0000286 RHECIAT_CH0000285 - 299921..301030 -/Xre-GNAT
3 2 RHECIAT_CH0000456 RHECIAT_CH0000455 - 466000..466676 vapBC */RHH-PIN
4 2 RHECIAT_CH0000918 RHECIAT_CH0000919 - 927011..927729 vapBC */PHD-PIN
5 2 RHECIAT_CH0001218 RHECIAT_CH0001217 - 1212062..1212720 RelBE or parDE */RHH-RelE
6 2 RHECIAT_CH0001234 RHECIAT_CH0001235 - 1229108..1229769 vapBC */PHD-PIN
7 2 RHECIAT_CH0001569 RHECIAT_CH0001570 - 1561650..1562260 phd-doc */AbrB-Fic
8 2 RHECIAT_CH0002523 RHECIAT_CH0002524 - 2537384..2538408 -/ArsR-COG3832
9 2 RHECIAT_CH0002528 RHECIAT_CH0002529 - 2540226..2540956 -/ArsR-COG3832
10 2 RHECIAT_CH0002953 RHECIAT_CH0002952 - 2950657..2951327 -/ArsR-COG3832
11 2 RHECIAT_CH0002962 RHECIAT_CH0002963 - 2961435..2962108 vapBC */AbrB-PIN
12 2 RHECIAT_CH0003292 RHECIAT_CH0003293 - 3305190..3305904 relBE */Xre-RelE
13 2 RHECIAT_CH0003380 RHECIAT_CH0003381 - 3403008..3403663 vapBC */PHD-PIN
14 2 RHECIAT_CH0003719 RHECIAT_CH0003718 - 3755575..3756239 vapBC */AbrB-PIN

: TA pair identified by RASTA-Bacteria .
* : TA family predicted based on the TA domain pair using the relationship in Table S2

The further putative TA pairs predicted by RASTA-Bacteria .
#ToxinDomain1Score1AntitoxinDomain2Score2Replicon
1RHECIAT_CH0001217HicB80.16RHECIAT_CH0001218Plasmid_stabil/ParE/RelE89.89NC_010994
2RHECIAT_CH0001570MazE/SpoVT_AbrB/AbrB89.22RHECIAT_CH0001569Doc/DOC89.55NC_010994
3RHECIAT_CH0000454-60.1RHECIAT_CH0000455StbC87.38NC_010994
4RHECIAT_CH0000455StbC87.38RHECIAT_CH0000456VapC/PIN/COG184886.54NC_010994
5RHECIAT_CH0003381Phd/StbD84.18RHECIAT_CH0003380PIN/COG184884.72NC_010994
6RHECIAT_CH0003054-68.35RHECIAT_CH0003055Phd76.69NC_010994
7RHECIAT_CH0001235-63.1RHECIAT_CH0001234VapC/PIN/COG184874.94NC_010994
Note: The RASTA-Bacteria algorithm utilises rpsblast search and typical characteristics of TA loci, such as a two-gene, co-directed module coding for small proteins, to identify TA hits. RASTA-Bacteria TA pair hits with one score >70% and the other > 60% were recorded by TADB, this strict cut-off yields broadly reliable TA candidates.