TADB
Rhodopseudomonas palustris TIE-1 chromosome, complete genome. chromosome

# GENOME INFO
Genome size (bp) : 5744041
Link to NCBI Taxonomy Browser by Tax_id :395960
 
# TA INFO in replicon: NC_011004
#TypeToxinAntitoxinRegulatorLocationClassification(family/domain)
1 2 Rpal_0279 Rpal_0280 - 298294..298988 -/HEPN-MNT
2 2 Rpal_0280 Rpal_0279 - 298294..298988 -/HEPN-MNT(antitoxin)
3 2 Rpal_0895 Rpal_0894 - 955015..955565 -/COG2442-PIN
4 2 Rpal_1011 Rpal_1012 - 1074092..1074696 mazEF */XF1863-MazF
5 2 Rpal_1474 Rpal_1475 - 1556196..1556976 -/ArsR-COG3832
6 2 Rpal_1485 Rpal_1484 - 1565047..1565670 relBE */Xre-RelE
7 2 Rpal_2037 Rpal_2038 - 2208555..2209219 vapBC */PHD-PIN
8 2 Rpal_2182 Rpal_2181 - 2364598..2365292 relBE */Xre-RelE
9 2 Rpal_2431 Rpal_2432 - 2620339..2621978 -/Xre-COG3832
10 2 Rpal_2525 Rpal_2524 - 2723240..2723869 relBE */Xre-RelE
11 2 Rpal_2763 Rpal_2764 - 3005841..3006429 relBE */Xre-RelE
12 2 Rpal_3002 Rpal_3003 - 3269581..3270146 RelBE or parDE */RHH-RelE
13 2 Rpal_3226 Rpal_3227 - 3473173..3473725 -/RHH-COG2929
14 2 Rpal_3577 Rpal_3576 - 3825823..3826715 -/COG5642-COG5654
15 2 Rpal_3615 Rpal_3616 - 3872606..3873205 relBE */Xre-RelE
16 2 Rpal_3938 Rpal_3939 - 4226316..4226940 vapBC */RHH-PIN
17 2 Rpal_3973 Rpal_3974 - 4267075..4267730 vapBC */AbrB-PIN
18 2 Rpal_4101 Rpal_4102 - 4399957..4400813 -/RHH-GNAT
19 2 Rpal_4127 Rpal_4128 - 4421993..4422536 -/RHH-COG2929
20 2 Rpal_4351 Rpal_4350 - 4676145..4676859 higBA (relBE) */COG5606-RelE
21 2 Rpal_4543 Rpal_4542 - 4893575..4894242 vapBC */PHD-PIN
22 2 Rpal_4620 Rpal_4619 - 4980898..4981550 vapBC */RHH-PIN
23 2 Rpal_4827 Rpal_4828 - 5194631..5195226 relBE */Xre-RelE
24 2 Rpal_4929 Rpal_4930 - 5310881..5311424 -/RHH-COG2929

: TA pair identified by RASTA-Bacteria .
- : unclassified

The further putative TA pairs predicted by RASTA-Bacteria .
#ToxinDomain1Score1AntitoxinDomain2Score2Replicon
1Rpal_1484VapI/HTH_3/HTH_XRE/HTH_XRE/COG549989.29Rpal_1485Plasmid_killer/HigB90.95NC_011004
2Rpal_3939-66.22Rpal_3938COG411373.26NC_011004
3Rpal_3003-67.97Rpal_3002Plasmid_stabil/ParE79.51NC_011004
4Rpal_3362-63.03Rpal_3361HTH_XRE/HTH_XRE/HTH_3/HipB76.89NC_011004
5Rpal_4542StbD/Phd87.28Rpal_4543VapC/PIN/COG184887.62NC_011004
6Rpal_3616VapI/HTH_XRE/HTH_XRE/HTH_391.42Rpal_3615HigB/Plasmid_killer92.95NC_011004
7Rpal_4399-67.93Rpal_4398Plasmid_stabil/ParE/RelE79.58NC_011004
8Rpal_4828VapI/HTH_3/HTH_XRE/HTH_XRE/COG5499/HipB88.67Rpal_4827HigB/Plasmid_killer93.79NC_011004
9Rpal_1012-67.93Rpal_1011MazF/PemK74.69NC_011004
10Rpal_1264-65.26Rpal_1265Plasmid_stabil/ParE77.11NC_011004
Note: The RASTA-Bacteria algorithm utilises rpsblast search and typical characteristics of TA loci, such as a two-gene, co-directed module coding for small proteins, to identify TA hits. RASTA-Bacteria TA pair hits with one score >70% and the other > 60% were recorded by TADB, this strict cut-off yields broadly reliable TA candidates.