TADB
Pelodictyon phaeoclathratiforme BU-1 chromosome, complete genome. chromosome

# GENOME INFO
Genome size (bp) : 3018238
Link to NCBI Taxonomy Browser by Tax_id :324925
 
# TA INFO in replicon: NC_011060
#TypeToxinAntitoxinRegulatorLocationClassification(family/domain)
1 2 Ppha_0058 Ppha_0057 - 56330..57695 ygiT-mqsR (relBE) */Xre-YgiU
2 2 Ppha_0144 Ppha_0145 - 154542..155089 RelBE or parDE */RHH-RelE
3 2 Ppha_0151 Ppha_0152 - 159156..159826 vapBC */AbrB-PIN
4 2 Ppha_0155 Ppha_0156 - 160528..161159 relBE */Xre-RelE
5 2 Ppha_0162 Ppha_0161 - 162641..163367 vapBC */COG2886-PIN
6 2 Ppha_0165 Ppha_0164 - 164076..164766 relBE */Xre-RelE
7 2 Ppha_0188 Ppha_0187 - 181743..182353 vapBC */PHD-PIN
8 2 Ppha_0261 Ppha_0262 - 256608..257392 hipBA */Xre-HipA
9 2 Ppha_0265 Ppha_0264 - 258930..259512 mazEF */AbrB-MazF
10 2 Ppha_0266 Ppha_0267 - 259628..261158 hipBA */Xre-HipA
11 2 Ppha_0279 Ppha_0280 - 280736..281265 relBE or parDE */PHD-RelE
12 2 Ppha_0521 Ppha_0522 - 511180..511919 -/HEPN-MNT
13 2 Ppha_0681 Ppha_0682 - 701944..702539 relBE or parDE */PHD-RelE
14 2 Ppha_0787 Ppha_0786 - 823712..825258 -/-
15 2 Ppha_0790 Ppha_0791 - 829304..829925 relBE */Xre-RelE
16 2 Ppha_0896 Ppha_0897 - 936707..937212 RelBE or parDE */RHH-RelE
17 2 Ppha_0899 Ppha_0898 - 937512..938107 relBE */Xre-RelE
18 2 Ppha_0914 Ppha_0915 - 950901..951453 -/RHH-COG2929
19 2 Ppha_0985 Ppha_0986 - 1021547..1022193 relBE */Xre-RelE
20 2 Ppha_1043 Ppha_1042 - 1076109..1076716 relBE or parDE */PHD-RelE
21 2 Ppha_1048 Ppha_1049 - 1083038..1083597 vapBC */Xre-PIN
22 2 Ppha_1128 Ppha_1127 - 1167395..1170081 -/-
23 2 Ppha_1180 Ppha_1179 - 1234634..1235150 RelBE or parDE */RHH-RelE
24 2 Ppha_1272 Ppha_1271 - 1333151..1333619 RelBE or parDE */RHH-RelE
25 2 Ppha_1277 Ppha_1276 - 1335981..1336627 vapBC */AbrB-PIN
26 2 Ppha_1370 Ppha_1371 - 1435773..1436386 phd-doc */AbrB-Fic
27 2 Ppha_1376 Ppha_1377 - 1441298..1441880 relBE */Xre-RelE
28 2 Ppha_1397 Ppha_1396 - 1460577..1461412 -/HEPN-MNT
29 2 Ppha_1408 Ppha_1409 - 1467714..1468315 vapBC */Xre-PIN
30 2 Ppha_1443 Ppha_1444 - 1518152..1518690 relBE or parDE */PHD-RelE
31 2 Ppha_1554 Ppha_1555 - 1643842..1644427 vapBC */Xre-PIN
32 2 Ppha_1557 Ppha_1558 - 1645287..1646935 hipBA */Xre-HipA
33 2 Ppha_1589 Ppha_1588 - 1682309..1683108 -/HEPN-MNT
34 2 Ppha_1594 Ppha_1593 - 1685000..1685466 hicBA */HicB-HicA
35 2 Ppha_1596 Ppha_1597 - 1686120..1686819 relBE */Xre-RelE
36 2 Ppha_1705 Ppha_1706 - 1821344..1821840 RelBE or parDE */RHH-RelE
37 2 Ppha_1709 Ppha_1708 - 1822804..1823369 -/COG2442-PIN
38 2 Ppha_1715 Ppha_1716 - 1827650..1828300 -/RHH-COG2929
39 2 Ppha_1720 Ppha_1718 - 1828860..1830883 vapBC */RHH-PIN
40 2 Ppha_1723 Ppha_1724 - 1832032..1832677 relBE */Xre-RelE
41 2 Ppha_1735 Ppha_1734 - 1841275..1842010 -/HEPN-MNT
42 2 Ppha_1746 Ppha_1745 - 1845626..1846281 vapBC */AbrB-PIN
43 2 Ppha_1841 Ppha_1840 - 1939899..1940615 ygiT-mqsR (relBE) */Xre-YgiU
44 2 Ppha_1842 Ppha_1843 - 1940782..1941587 -/RHH-GNAT
45 2 Ppha_1844 Ppha_1845 - 1941786..1942476 relBE */Xre-RelE
46 2 Ppha_1903 Ppha_1904 - 1991036..1991747 relBE */Xre-RelE
47 2 Ppha_1917 Ppha_1916 - 2008964..2009700 relBE */Xre-RelE
48 2 Ppha_1926 Ppha_1925 - 2018816..2019410 -/RHH-COG2929
49 2 Ppha_2030 Ppha_2031 - 2120595..2121228 relBE */Xre-RelE
50 2 Ppha_2046 Ppha_2047 - 2138688..2139707 hipBA */Xre-HipA
51 2 Ppha_2116 Ppha_2115 - 2200194..2200688 hicBA */HicB-HicA
52 2 Ppha_2119 Ppha_2120 - 2201937..2202633 vapBC */PHD-PIN
53 2 Ppha_2124 Ppha_2125 - 2205215..2205836 relBE */Xre-RelE
54 2 Ppha_2183 Ppha_2184 - 2266643..2267112 vapBC */PHD-PIN
55 2 Ppha_2193 Ppha_2194 - 2277973..2278556 relBE or parDE */PHD-RelE
56 2 Ppha_2227 Ppha_2226 - 2312294..2313419 -/Xre-COG5654
57 2 Ppha_2229 Ppha_2228 - 2313471..2315094 hipBA */Xre-HipA
58 2 Ppha_2242 Ppha_2243 - 2329312..2329970 relBE */Xre-RelE
59 2 Ppha_2247 Ppha_2246 - 2330702..2331776 -/Xre-COG5654
60 2 Ppha_2272 Ppha_2271 - 2353800..2354302 -/RHH-COG2929
61 2 Ppha_2409 Ppha_2410 - 2493543..2494113 -/RHH-COG2929
62 2 Ppha_2504 Ppha_2503 - 2590409..2590940 RelBE or parDE */RHH-RelE
63 2 Ppha_2521 Ppha_2520 - 2598646..2599198 -/RHH-COG2929
64 2 Ppha_2586 Ppha_2587 - 2660982..2661502 relBE or parDE */PHD-RelE
65 2 Ppha_2713 Ppha_2712 - 2804643..2805541 relBE */Xre-RelE
66 2 Ppha_2777 Ppha_2778 - 2869090..2869727 vapBC */AbrB-PIN
67 2 Ppha_2824 Ppha_2825 - 2911908..2912662 vapBC */COG2886-PIN

: TA pair identified by RASTA-Bacteria .
* : TA family predicted based on the TA domain pair using the relationship in Table S2

The further putative TA pairs predicted by RASTA-Bacteria .
#ToxinDomain1Score1AntitoxinDomain2Score2Replicon
1Ppha_1377VapI/HTH_XRE/HTH_XRE/HTH_3/COG549991.93Ppha_1376HigB/Plasmid_killer93.63NC_011060
2Ppha_2792HTH_XRE/HTH_XRE/HipB/HTH_3/VapI63.92Ppha_2791PIN/VapC71.45NC_011060
3Ppha_0756-63.81Ppha_0757COG411370.24NC_011060
4Ppha_0825-62.74Ppha_0826StbC78.48NC_011060
5Ppha_1852-60.97Ppha_1851HTH_XRE/HTH_XRE/HTH_3/VapI/HipB73.65NC_011060
6Ppha_0094COG1848/PIN/VapC86.63Ppha_0093MazE91.03NC_011060
7Ppha_2633-64.64Ppha_2634Plasmid_stabil70.76NC_011060
8Ppha_2629HTH_XRE/HTH_XRE/HTH_3/HipB63.67Ppha_2630PIN/COG4113/COG184870.9NC_011060
9Ppha_2271HTH_474.86Ppha_2270-64.03NC_011060
10Ppha_0986HTH_XRE/HTH_XRE/HTH_3/HipB/VapI84.76Ppha_0985RelE93.31NC_011060
11Ppha_2031VapI/HTH_XRE/HTH_XRE/HTH_3/COG5499/HipB88.9Ppha_2030HigB/Plasmid_killer92.57NC_011060
12Ppha_2712HTH_XRE/HTH_XRE/HTH_3/HipB/VapI73.38Ppha_2713-60.61NC_011060
13Ppha_1444StbD91.12Ppha_1443RelE92.5NC_011060
14Ppha_1097-67.55Ppha_1096VagC/SpoVT_AbrB79.84NC_011060
15Ppha_0835-61.26Ppha_0836Plasmid_stabil/ParE/RelE75.98NC_011060
16Ppha_1745-68.39Ppha_1746PIN/COG184870.56NC_011060
17Ppha_1409-64.19Ppha_1408PIN72.37NC_011060
18Ppha_1548VapI/HTH_XRE/HTH_3/HTH_XRE/HipB63.94Ppha_1549HigB/Plasmid_killer75.39NC_011060
19Ppha_2115COG159886.32Ppha_2116COG172487.97NC_011060
20Ppha_1371MazE/SpoVT_AbrB85.32Ppha_1370Doc/DOC89.86NC_011060
21Ppha_0280-65.26Ppha_0279Plasmid_stabil/ParE76.3NC_011060
22Ppha_1736-65.77Ppha_1737MazF/PemK74.51NC_011060
23Ppha_1049-64.87Ppha_1048VapC/PIN74.53NC_011060
24Ppha_1179-67.68Ppha_1180ParE77.17NC_011060
25Ppha_0267HTH_XRE/HTH_XRE/HTH_3/HipB83.4Ppha_0266HipA83.98NC_011060
26Ppha_1721-63.93Ppha_1720PIN/COG1848/COG4113/VapC73.46NC_011060
27Ppha_2711-60.03Ppha_2712HTH_XRE/HTH_XRE/HTH_3/HipB/VapI73.38NC_011060
28Ppha_0419-65.77Ppha_0420VapC/PIN74.37NC_011060
29Ppha_2130-61.52Ppha_2131MazF/PemK74.41NC_011060
30Ppha_1555-63.58Ppha_1554VapC/PIN/COG4113/COG184873.57NC_011060
31Ppha_1706-67.97Ppha_1705Plasmid_stabil/RelE77.61NC_011060
32Ppha_2647-60.48Ppha_2648HTH_XRE/HTH_XRE/HipB/HTH_3/VapI78.03NC_011060
33Ppha_0607-67.1Ppha_0608PIN/COG1848/VapC/COG411373.57NC_011060
34Ppha_2587-67.71Ppha_2586Plasmid_killer/RelE/HigB79.11NC_011060
35Ppha_0145-62.45Ppha_0144Plasmid_stabil/ParE78.81NC_011060
36Ppha_1791-63.06Ppha_1792HigB/Plasmid_killer/RelE79.3NC_011060
Note: The RASTA-Bacteria algorithm utilises rpsblast search and typical characteristics of TA loci, such as a two-gene, co-directed module coding for small proteins, to identify TA hits. RASTA-Bacteria TA pair hits with one score >70% and the other > 60% were recorded by TADB, this strict cut-off yields broadly reliable TA candidates.