TADB
Salmonella enterica subsp. enterica serovar Dublin str. CT 02021853

# GENOME INFO
Genome size (bp) : 4842908
Link to NCBI Taxonomy Browser by Tax_id :439851
 
# TA INFO in replicon: NC_011205
#TypeToxinAntitoxinRegulatorLocationClassification(family/domain)
1 2 SeD_A3212 SeD_A3211 - 3090089..3090894 -/RHH-GNAT
2 2 SeD_A3368 SeD_A3369 - 3242207..3242832 vapBC */AbrB-PIN
3 2 SeD_A3838 SeD_A3839 - 3661152..3661911 -/YhfG-Fic
4 2 SeD_A3886 SeD_A3887 - 3719652..3720190 RelBE or parDE */RHH-RelE
5 2 SeD_A3929 SeD_A3930 - 3767714..3768300 phd-doc */PHD-Fic
6 2 SeD_A4173 SeD_A4174 - 4017418..4018129 relBE */Xre-RelE
7 2 SeD_A4296 SeD_A4297 - 4144215..4144915 higBA (relBE) */COG5606-RelE
8 2 SeD_A4420 SeD_A4419 - 4266599..4267353 relBE */Xre-RelE
9 2 SeD_A4422 SeD_A4424 - 4268766..4269188 relBE */Xre-RelE
10 2 SeD_A4713 SeD_A4712 - 4576600..4577381 -/RHH-GNAT
11 2 SeD_A4830 SeD_A4829 - 4683797..4684313 RelBE or parDE */RHH-RelE
12 2 SeD_A4876 SeD_A4875 - 4724970..4725520 mazEF, ccd or relBE */RHH-MazF
13 2 SeD_A4941 SeD_A4942 - 4775173..4775749 -/RHH-COG2929

: TA pair identified by RASTA-Bacteria .
- : unclassified

The further putative TA pairs predicted by RASTA-Bacteria .
#ToxinDomain1Score1AntitoxinDomain2Score2Replicon
1SeD_A4829RelB90.8SeD_A4830RelE93.38NC_011205
2SeD_A2778HTH_XRE/HTH_XRE/HTH_383.25SeD_A2777HTH_XRE/HTH_XRE84.07NC_011205
3SeD_A0651-67.97SeD_A0652HicB/HicB74.55NC_011205
Note: The RASTA-Bacteria algorithm utilises rpsblast search and typical characteristics of TA loci, such as a two-gene, co-directed module coding for small proteins, to identify TA hits. RASTA-Bacteria TA pair hits with one score >70% and the other > 60% were recorded by TADB, this strict cut-off yields broadly reliable TA candidates.