TADB
Acidithiobacillus ferrooxidans ATCC 53993 chromosome, complete chromosome

# GENOME INFO
Genome size (bp) : 2885038
Link to NCBI Taxonomy Browser by Tax_id :380394
 
# TA INFO in replicon: NC_011206
#TypeToxinAntitoxinRegulatorLocationClassification(family/domain)
1 2 Lferr_0088 Lferr_0087 - 86406..87040 vapBC */PHD-PIN
2 2 Lferr_0090 Lferr_0091 - 87493..88101 relBE */Xre-RelE
3 2 Lferr_0132 Lferr_0133 - 123504..124138 -/RHH-COG2929
4 2 Lferr_0229 Lferr_0230 - 216318..216886 vapBC */RHH-PIN
5 2 Lferr_0233 Lferr_0234 - 218478..219515 -/MerR-PIN
6 2 Lferr_0264 Lferr_0263 - 251433..251917 RelBE or parDE */RHH-RelE
7 2 Lferr_0576 Lferr_0577 - 536810..537438 vapBC */PHD-PIN
8 2 Lferr_0638 Lferr_0637 - 597067..597707 vapBC */AbrB-PIN
9 2 Lferr_0995 Lferr_0994 - 966553..967055 relBE or parDE */PHD-RelE
10 2 Lferr_1012 Lferr_1011 - 979099..979624 relBE or parDE */PHD-RelE
11 2 Lferr_1132 Lferr_1133 - 1108101..1108933 relBE */AbrB-RelE
12 2 Lferr_1136 Lferr_1137 - 1110001..1110764 -/RHH-GNAT
13 2 Lferr_1289 Lferr_1290 - 1256907..1257475 vapBC */RHH-PIN
14 2 Lferr_1303 Lferr_1302 - 1262943..1264503 -/-
15 2 Lferr_1315 Lferr_1314 - 1276745..1277265 -/RHH-COG2929
16 2 Lferr_1332 Lferr_1333 - 1286918..1288236 RelBE or parDE */RHH-RelE
17 2 Lferr_1400 Lferr_1399 - 1356430..1356832 RelBE or parDE */RHH-RelE
18 2 Lferr_1456 Lferr_1455 - 1414294..1414968 vapBC */RHH-PIN
19 2 Lferr_1788 Lferr_1789 - 1768380..1769017 vapBC */AbrB-PIN
20 2 Lferr_2045 Lferr_2046 - 2049759..2050279 -/RHH-COG2929
21 2 Lferr_2283 Lferr_2284 - 2255703..2256177 -/RHH-COG2929
22 2 Lferr_2391 Lferr_2392 - 2359455..2360099 vapBC */AbrB-PIN
23 2 Lferr_2505 Lferr_2506 - 2467000..2467631 mazEF */AbrB-MazF
24 2 Lferr_2508 Lferr_2509 - 2468635..2469271 vapBC */AbrB-PIN
25 2 Lferr_2597 Lferr_2596 - 2571521..2572215 vapBC */PHD-PIN
26 2 Lferr_2769 Lferr_2770 - 2750742..2751417 vapBC */PHD-PIN
27 2 Lferr_2867 Lferr_2866 - 2850532..2851293 vapBC */PHD-PIN

: TA pair identified by RASTA-Bacteria .
* : TA family predicted based on the TA domain pair using the relationship in Table S2

The further putative TA pairs predicted by RASTA-Bacteria .
#ToxinDomain1Score1AntitoxinDomain2Score2Replicon
1Lferr_0091VapI/HTH_XRE/HTH_XRE/HTH_389.08Lferr_0090Plasmid_killer/HigB93.67NC_011206
2Lferr_1011StbD91.11Lferr_1012RelE92.79NC_011206
3Lferr_1456VapC/PIN/COG184886.91Lferr_1457AbrB/SpoVT_AbrB88.86NC_011206
4Lferr_1423COG1598/HTH_XRE/HTH_XRE/HTH_382.79Lferr_1424HTH_XRE/HTH_XRE/HTH_385.67NC_011206
5Lferr_0263-63.81Lferr_0264ParE/Plasmid_stabil78.12NC_011206
6Lferr_1331-62.9Lferr_1332HTH_XRE/HTH_XRE/HTH_376.53NC_011206
7Lferr_1399-63.93Lferr_1400Plasmid_stabil/ParE74.93NC_011206
8Lferr_0230-64.32Lferr_0229VapC/PIN72.61NC_011206
9Lferr_1290-61.71Lferr_1289VapC/PIN72.61NC_011206
10Lferr_1423COG1598/HTH_XRE/HTH_XRE/HTH_382.79Lferr_1422-65.58NC_011206
11Lferr_1788VapC/PIN/COG184889.29Lferr_1787-63.1NC_011206
12Lferr_1457AbrB/SpoVT_AbrB88.86Lferr_1458-60.68NC_011206
13Lferr_1012RelE92.79Lferr_1013-60.48NC_011206
Note: The RASTA-Bacteria algorithm utilises rpsblast search and typical characteristics of TA loci, such as a two-gene, co-directed module coding for small proteins, to identify TA hits. RASTA-Bacteria TA pair hits with one score >70% and the other > 60% were recorded by TADB, this strict cut-off yields broadly reliable TA candidates.