TADB
Dyadobacter fermentans DSM 18053 chromosome, complete genome. chromosome

# GENOME INFO
Genome size (bp) : 6967790
Link to NCBI Taxonomy Browser by Tax_id :471854
 
# TA INFO in replicon: NC_013037
#TypeToxinAntitoxinRegulatorLocationClassification(family/domain)
1 2 Dfer_5529 Dfer_5530 - 6657569..6658278 relBE */Xre-RelE

: TA pair identified by RASTA-Bacteria .
* : TA family predicted based on the TA domain pair using the relationship in Table S2

The further putative TA pairs predicted by RASTA-Bacteria .
#ToxinDomain1Score1AntitoxinDomain2Score2Replicon
1Dfer_4918VapI/HTH_XRE/HTH_XRE/HTH_3/COG549991.51Dfer_4917HigB/Plasmid_killer/RelE93.95NC_013037
2Dfer_2505VapI/HTH_XRE/HTH_XRE/HTH_3/HipB88.61Dfer_2504Plasmid_killer/HigB/RelE93.9NC_013037
3Dfer_1123VapI/HTH_XRE/HTH_XRE/HTH_3/HipB88.79Dfer_1124Plasmid_killer/HigB/RelE93.79NC_013037
4Dfer_4499Plasmid_killer/HigB91.36Dfer_4500VapI/HTH_XRE/HTH_XRE/HTH_3/COG549991.9NC_013037
5Dfer_1185MazF/PemK89.24Dfer_1186MazE91.77NC_013037
6Dfer_1717-68.39Dfer_1718MazF/PemK88.87NC_013037
7Dfer_1718MazF/PemK88.87Dfer_1719HTH_XRE/HTH_XRE/HTH_3/VapI/HipB86.3NC_013037
8Dfer_4169HTH_XRE/HTH_XRE/HTH_3/HipB63.43Dfer_4168COG184882.16NC_013037
9Dfer_3993-62.68Dfer_3992RelE79.79NC_013037
10Dfer_5648-64.23Dfer_5649RelE79.29NC_013037
11Dfer_2600-67.97Dfer_2599RelE78.57NC_013037
12Dfer_0425-68.35Dfer_0424ParE77.73NC_013037
13Dfer_2860-61.52Dfer_2859HigB/Plasmid_killer76.7NC_013037
14Dfer_3422-68.13Dfer_3423ParE76.24NC_013037
15Dfer_2469-68.39Dfer_2468VapC/PIN76.21NC_013037
16Dfer_4421-64.87Dfer_4420VapC/PIN75.95NC_013037
17Dfer_4426-64.13Dfer_4425COG5499/HTH_XRE/HTH_XRE/HTH_375.77NC_013037
18Dfer_5767-63.1Dfer_5766VapC/PIN/COG1848/COG411375.5NC_013037
19Dfer_4845-62.52Dfer_4846Plasmid_stabil/ParE75.29NC_013037
20Dfer_1520-62.52Dfer_1519HTH_XRE/HTH_XRE/HTH_3/HipB/VapI74.52NC_013037
21Dfer_2131-63.19Dfer_2132COG5499/HTH_XRE/HTH_XRE/HTH_3/VapI73.77NC_013037
22Dfer_3709-62.64Dfer_3710RelE73.69NC_013037
23Dfer_3977-66.68Dfer_3978COG549973.55NC_013037
24Dfer_4296-62.9Dfer_4295COG5499/HTH_3/HTH_XRE73.48NC_013037
25Dfer_4903-67.68Dfer_4904PIN73.1NC_013037
26Dfer_3206-68.39Dfer_3205PIN/COG184872.65NC_013037
27Dfer_4656-64.64Dfer_4655Plasmid_stabil72.58NC_013037
28Dfer_0378-65.35Dfer_0377PIN/COG184872.42NC_013037
29Dfer_0281-62.61Dfer_0280HicB/HicB70.19NC_013037
30Dfer_2505VapI/HTH_XRE/HTH_XRE/HTH_3/HipB88.61Dfer_2506-63.55NC_013037
Note: The RASTA-Bacteria algorithm utilises rpsblast search and typical characteristics of TA loci, such as a two-gene, co-directed module coding for small proteins, to identify TA hits. RASTA-Bacteria TA pair hits with one score >70% and the other > 60% were recorded by TADB, this strict cut-off yields broadly reliable TA candidates.