TADB
Lactobacillus rhamnosus Lc 705 chromosome, complete genome. chromosome

# GENOME INFO
Genome size (bp) : 2968598
Link to NCBI Taxonomy Browser by Tax_id :568704
 
# TA INFO in replicon: NC_013199
#TypeToxinAntitoxinRegulatorLocationClassification(family/domain)
1 2 - 512909..513394 -/-
2 2 LC705_02444 LC705_02445 - 2484225..2484787 mazEF/AbrB-MazF
3 2 LC705_02539 LC705_02540 - 2581133..2581784 mazEF, ccd or relBE */RHH-MazF
4 2 LC705_02727 LC705_02726 - 2763807..2764329 yefM-yoeB/-
5 2 Lc705_02726 Lc705_02727 - 2763807..2764329 -/RHH-MazF(antitoxin)

: TA pair identified by RASTA-Bacteria .
- : unclassified

The further putative TA pairs predicted by RASTA-Bacteria .
#ToxinDomain1Score1AntitoxinDomain2Score2Replicon
1LC705_00854HTH_XRE/HTH_XRE/HTH_3/HipB84.8LC705_00853HTH_XRE/HTH_XRE/HTH_390.5NC_013199
2LC705_02540HTH_486.65LC705_02444MazF/PemK87.21NC_013199
3LC705_00508-62.81LC705_00509RelB79.01NC_013199
4LC705_01004-65LC705_01005HTH_XRE/HTH_XRE/HTH_3/HipB/VapI78.06NC_013199
5LC705_00682-68.35LC705_00681HTH_XRE/HTH_XRE/HTH_373.41NC_013199
6LC705_01944-60.13LC705_01943HTH_XRE/HTH_XRE/HTH_3/VapI/HipB73.24NC_013199
Note: The RASTA-Bacteria algorithm utilises rpsblast search and typical characteristics of TA loci, such as a two-gene, co-directed module coding for small proteins, to identify TA hits. RASTA-Bacteria TA pair hits with one score >70% and the other > 60% were recorded by TADB, this strict cut-off yields broadly reliable TA candidates.