 TA ID | 5687 |
| Type | 2 |
| Replicon | NC_010831 [Browse all TAs(s) in this replicon] |
| Strain | Chlorobium phaeobacteroides BS1 chromosome, complete genome. |
| Location | 2315339..2315871 |
| Classification (toxin-antitoxin) | -/RHH-RelE |
| Toxin | Cphamn1_2139 (101 a.a. | 2315339..2315644 | GeneID: 6375833) |
| Antitoxin | Cphamn1_2140 (76 a.a. | 2315641..2315871 | GeneID: 6375834) |
| Protein Sequence: 101 a.a. |
| >gi|189501058|ref|YP_001960528.1| plasmid stabilization system [Chlorobium phaeobacteroides BS1] [Cphamn1_2139] MSIIVFDTDARSEFLSSVEYYEECRAGLGRRFREVVELAVNSVANNPFRYRVLHKSFRRCLIPKFPHAII FSIEPDFILVIAVAHVKRKPGYWNDRIEKYR |
| Nucleotide Sequence: 306 bp |
| >gi|189499000|ref|NC_010831.1|:c2315644-2315339 Chlorobium phaeobacteroides BS1 chromosome, complete genome [Cphamn1_2139] ATGAGCATCATAGTATTTGATACTGATGCTCGCTCGGAGTTTTTATCATCTGTTGAGTATTATGAAGAAT GCCGGGCAGGACTTGGCCGTCGCTTCCGCGAGGTTGTTGAATTGGCTGTAAACTCAGTAGCAAACAATCC TTTTCGTTACCGAGTACTCCACAAGTCTTTTCGGCGGTGTCTTATACCGAAGTTTCCTCATGCAATAATT TTTTCTATTGAACCAGATTTCATTCTGGTCATTGCTGTGGCGCATGTCAAACGTAAGCCGGGGTACTGGA ATGATCGTATTGAAAAATACCGGTAA |
 Primer design |
| Protein Sequence: 76 a.a. |
| >gi|189501059|ref|YP_001960529.1| addiction module protein [Chlorobium phaeobacteroides BS1] [Cphamn1_2140] MTEMAKKIVQEALRLPIEERAFLADRLLGSLDREVMTEVDAAWVAEAESRYAEYKAGKRKPVSAKDVFDE ADRLLT |
| Nucleotide Sequence: 231 bp |
| >gi|189499000|ref|NC_010831.1|:c2315871-2315641 Chlorobium phaeobacteroides BS1 chromosome, complete genome [Cphamn1_2140] ATGACAGAAATGGCAAAAAAAATAGTGCAGGAGGCTCTCAGGTTGCCAATCGAAGAACGTGCTTTTCTTG CCGATAGACTTCTTGGTTCGCTGGACCGTGAGGTGATGACCGAGGTCGATGCTGCATGGGTGGCTGAAGC AGAGAGCCGTTATGCGGAATACAAGGCAGGAAAACGGAAACCTGTTTCTGCGAAAGATGTCTTTGATGAA GCAGATCGTCTGCTTACATGA |
| Primer design |
The information of TA components from NC_010831 | |||||
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| # | Locus tag (Gene) | Coordinates [+/-], size (bp) | Protein GI | Product | Component (H_value) |
| 1 | Cphamn1_2134 | 2310916..2311389 [-], 474 | 189501053 | FKBP-type peptidylprolyl isomerase | - |
| 2 | Cphamn1_2135 | 2311622..2312305 [+], 684 | 189501054 | surface antigen msp4 family protein | - |
| 3 | Cphamn1_2136 | 2312377..2313426 [-], 1050 | 189501055 | mechanosensitive ion channel MscS | - |
| 4 | Cphamn1_2137 | 2313446..2314636 [-], 1191 | 189501056 | amine oxidase | - |
| 5 | Cphamn1_2138 | 2314731..2315273 [-], 543 | 189501057 | transferase | - |
| 6 | Cphamn1_2139 | 2315339..2315644 [-], 306 | 189501058 | plasmid stabilization system | Toxin |
| 7 | Cphamn1_2140 | 2315641..2315871 [-], 231 | 189501059 | addiction module protein | Antitoxin |
| 8 | Cphamn1_2141 | 2316278..2316475 [-], 198 | 189501060 | hypothetical protein | - |
| 9 | Cphamn1_2142 | 2316623..2318020 [+], 1398 | 189501061 | hypothetical protein | - |
| 10 | Cphamn1_2143 | 2318250..2318783 [-], 534 | 189501062 | hypothetical protein | - |
| 11 | Cphamn1_2144 | 2318883..2320280 [+], 1398 | 189501063 | hypothetical protein | - |