TADB
Last Update: June, 2017

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Number of references found for the 'Bioinformatics' category : 21

References
(1) Heiss et al. (2015) Characterization of the Lactobacillus plantarum plasmid pCD033 and generation of the plasmid free strain L. plantarum 3NSH Plasmid 81:9-20. [PudMed:26038184]
(2) Fiedoruk K; Daniluk T; Swiecicka I; Sciepuk M; Leszczynska K (2014) Type II toxin-antitoxin systems are unevenly distributed among Escherichia coli phylogroups Microbiology 161(Pt 1):158-67. [PudMed:25378561]
(3) Szuplewska M; Ludwiczak M; Lyzwa K; Czarnecki J; Bartosik D (2014) Mobility and generation of mosaic non-autonomous transposons by Tn3-derived inverted-repeat miniature elements (TIMEs) PLoS One 9(8):e105010. [PudMed:25121765]
(4) Chopra N; Saumitra; Pathak A; Bhatnagar R; Bhatnagar S (2013) Linkage, mobility, and selfishness in the MazF family of bacterial toxins: a snapshot of bacterial evolution Genome Biol Evol 5(12):2268-84. [PudMed:24265503]
(5) Anantharaman V; Makarova KS; Burroughs AM; Koonin EV; Aravind L (2013) Comprehensive analysis of the HEPN superfamily: identification of novel roles in intra-genomic conflicts, defense, pathogenesis and RNA processing Biol Direct 8:15. [PudMed:23768067]
(6) Averina OV; Alekseeva MG; Abilev SK; Il'in VK; Danilenko VN (2013) [Distribution of genes of toxin-antitoxin systems of mazEF and relBE families in bifidobacteria from human intestinal microbiota] Genetika 49(3):315-27. [PudMed:23755531]
(7) Belda E; Sekowska A; Le Fevre F; Morgat A; Mornico D; Ouzounis C; Vallenet D; Medigue C; Danchin A (2013) An updated metabolic view of the Bacillus subtilis 168 genome Microbiology 159(Pt 4):757-70. [PudMed:23429746]
(8) Socolovschi C; Audoly G; Raoult D (2013) Connection of toxin-antitoxin modules to inoculation eschar and arthropod vertical transmission in Rickettsiales Comp Immunol Microbiol Infect Dis 36(2):199-209. [PudMed:23414774]
(9) Rankin DJ; Turner LA; Heinemann JA; Brown SP (2012) The coevolution of toxin and antitoxin genes drives the dynamics of bacterial addiction complexes and intragenomic conflict Proc Biol Sci 279(1743):3706-15. [PudMed:22787022]
(10) Barbosa LC et al. (2010) Function inferences from a molecular structural model of bacterial ParE toxin. Bioinformation. 4(10):438-40. [PudMed:20975905]
(11) Nogueira T et al. (2009) Horizontal gene transfer of the secretome drives the evolution of bacterial cooperation and virulence. Curr Biol. 19(20):1683-91. [PudMed:19800234]
(12) Romero P et al. (2009) Comparative genomic analysis of ten Streptococcus pneumoniae temperatebacteriophages. J Bacteriol 191(15):4854-62. [PudMed:19502408]
(13) Makarova KS et al. (2009) Comprehensive comparative-genomic analysis of type 2 toxin-antitoxin systems and related mobile stress response systems in prokaryotes. Biol Direct 4:19. [PudMed:19493340]
(14) Guglielmini J et al. (2008) Automated discovery and phylogenetic analysis of new toxin-antitoxin systems. BMC Microbiol 8:104. [PudMed:18578869]
(15) Bajaj K et al. (2007) Stereochemical criteria for prediction of the effects of proline mutations onprotein stability. PLoS Comput Biol 3(12):e241. [PudMed:18069886]
(16) Sevin EW et al. (2007) RASTA-Bacteria: a web-based tool for identifying toxin-antitoxin loci inprokaryotes. Genome Biol. 8(8):R155. . [PudMed:17678530]
(17) Makarova KS et al. (2006) The HicAB cassette, a putative novel, RNA-targeting toxin-antitoxin system inarchaea and bacteria. Bioinformatics 22(21):2581-4. [PudMed:16895922]
(18) Pandey DP et al. (2005) Toxin-antitoxin loci are highly abundant in free-living but lost from host-associated prokaryotes. Nucleic Acids Res. 33(3):966-76. [PudMed:15718296]
(19) Bhinge A et al. (2004) Accurate detection of protein:ligand binding sites using molecular dynamicssimulations. Structure 12(11):1989-99. [PudMed:15530363]
(20) Anantharaman V et al. (2003) New connections in the prokaryotic toxin-antitoxin network: relationship withthe eukaryotic nonsense-mediated RNA decay system. Genome Biol 4(12):R81. [PudMed:14659018]
(21) Mittenhuber G. (1999) Occurrence of mazEF-like antitoxin/toxin systems in bacteria. J Mol Microbiol Biotechnol 1(2):295-302. [PudMed:10943559]