TADB
Last Update: June, 2017

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Number of references found for the 'Genome/Sequence data' category : 37

References
(1) Li et al. (2016) Genomic analyses of multi-drug resistant Pseudomonas aeruginosa PA1 re-sequenced by single-molecule real-time sequencing Biosci Rep 36(6). pii: e00418. [PudMed:27765811]
(2) Ho et al. (2015) The Complete Sequence and Comparative Analysis of a Multidrug-Resistance and Virulence Multireplicon IncFII Plasmid pEC302/04 from an Extraintestinal Pathogenic Escherichia coli EC302/04 Indicate Extensive Diversity of IncFII Plasmids Front Microbiol 6:1547. [PudMed:26793180]
(3) Matilla MA; Salmond GP (2014) Bacteriophage varphiMAM1, a viunalikevirus, is a broad-host-range, high-efficiency generalized transducer that infects environmental and clinical isolates of the enterobacterial genera Serratia and Kluyvera Appl Environ Microbiol 80(20):6446-57. [PudMed:25107968]
(4) Cottell JL; Saw HT; Webber MA; Piddock LJ (2014) Functional genomics to identify the factors contributing to successful persistence and global spread of an antibiotic resistance plasmid BMC Microbiol 14:168. [PudMed:24961279]
(5) Mosqueda N; Gato E; Roca I; Lopez M; de Alegria CR; Fernandez Cuenca F; Martinez-Martinez L; Pachon J; Cisneros JM; Rodriguez-Bano J; Pascual A; Vila J; Bou G; Tomas M (2014) Characterization of plasmids carrying the blaOXA-24/40 carbapenemase gene and the genes encoding the AbkA/AbkB proteins of a toxin/antitoxin system J Antimicrob Chemother 69(10):2629-33. [PudMed:24879663]
(6) Ciric L; Brouwer MS; Mullany P; Roberts AP (2014) Minocycline resistance in an oral Streptococcus infantis isolate is encoded by tet(S) on a novel small, low copy number plasmid FEMS Microbiol Lett 353(2):106-15. [PudMed:24605990]
(7) Agnoli K; Frauenknecht C; Freitag R; Schwager S; Jenul C; Vergunst A; Carlier A; Eberl L (2014) The third replicon of members of the Burkholderia cepacia Complex, plasmid pC3, plays a role in stress tolerance Appl Environ Microbiol 80(4):1340-8. [PudMed:24334662]
(8) Wu Z; Wang W; Tang M; Shao J; Dai C; Zhang W; Fan H; Yao H; Zong J; Chen D; Wang J; Lu C (2014) Comparative genomic analysis shows that Streptococcus suis meningitis isolate SC070731 contains a unique 105K genomic island Gene 535(2):156-64. [PudMed:24316490]
(9) Mataseje LF; Boyd DA; Lefebvre B; Bryce E; Embree J; Gravel D; Katz K; Kibsey P; Kuhn M; Langley J; Mitchell R; Roscoe D; Simor A; Taylor G; Thomas E; Turgeon N; Mulvey MR (2014) Complete sequences of a novel blaNDM-1-harbouring plasmid from Providencia rettgeri and an FII-type plasmid from Klebsiella pneumoniae identified in Canada J Antimicrob Chemother 69(3):637-42. [PudMed:24275114]
(10) Venturini C; Hassan KA; Roy Chowdhury P; Paulsen IT; Walker MJ; Djordjevic SP (2013) Sequences of two related multiple antibiotic resistance virulence plasmids sharing a unique IS26-related molecular signature isolated from different Escherichia coli pathotypes from different hosts PLoS One 8(11):e78862. [PudMed:24223859]
(11) Rose G; Cortes T; Comas I; Coscolla M; Gagneux S; Young DB (2013) Mapping of genotype-phenotype diversity among clinical isolates of mycobacterium tuberculosis by sequence-based transcriptional profiling Genome Biol Evol 5(10):1849-62. [PudMed:24115728]
(12) Vercammen K; Garcia-Armisen T; Goeders N; Van Melderen L; Bodilis J; Cornelis P (2013) Identification of a metagenomic gene cluster containing a new class A beta-lactamase and toxin-antitoxin systems Microbiologyopen 2(4):674-83. [PudMed:23873667]
(13) Jaubert C; Danioux C; Oberto J; Cortez D; Bize A; Krupovic M; She Q; Forterre P; Prangishvili D; Sezonov G (2013) Genomics and genetics of Sulfolobus islandicus LAL14/1, a model hyperthermophilic archaeon Open Biol 3(4):130010. [PudMed:23594878]
(14) Anukam KC; Macklaim JM; Gloor GB; Reid G; Boekhorst J; Renckens B; van Hijum SA; Siezen RJ (2013) Genome sequence of Lactobacillus pentosus KCA1: vaginal isolate from a healthy premenopausal woman PLoS One 8(3):e59239. [PudMed:23527145]
(15) Balado M; Lemos ML; Osorio CR (2013) Genetic characterization of pPHDP60, a novel conjugative plasmid from the marine fish pathogen Photobacterium damselae subsp. piscicida Plasmid 70(1):154-9. [PudMed:23474463]
(16) Bonnin RA; Poirel L; Nordmann P; Eikmeyer FG; Wibberg D; Puhler A; Schluter A (2013) Complete sequence of broad-host-range plasmid pNOR-2000 harbouring the metallo-beta-lactamase gene blaVIM-2 from Pseudomonas aeruginosa J Antimicrob Chemother 68(5):1060-5. [PudMed:23354281]
(17) Wong CM; Tam HK; Ng WM; Boo SY; Gonzalez M (2013) Characterisation of a cryptic plasmid from an Antarctic bacterium Pedobacter cryoconitis strain BG5 Plasmid 69(2):186-93. [PudMed:23266397]
(18) Wibberg D; Szczepanowski R; Eikmeyer F; Puhler A; Schluter A (2013) The IncF plasmid pRSB225 isolated from a municipal wastewater treatment plant's on-site preflooder combining antibiotic resistance and putative virulence functions is highly related to virulence plasmids identified in pathogenic E. coli isolates Plasmid 69(2):127-37. [PudMed:23212116]
(19) Shkoporov AN; Khokhlova EV; Kulagina EV; Smeianov VV; Kuchmiy AA; Kafarskaya LI; Efimov BA (2013) Analysis of a novel 8.9kb cryptic plasmid from Bacteroides uniformis, its long-term stability and spread within human microbiota Plasmid 69(2):146-59. [PudMed:23201047]
(20) Gorlas A; Gimenez G; Raoult D; Roux V (2012) Draft genome sequences of Actinomyces timonensis strain 7400942T and its prophage J Bacteriol 194(23):6613-4. [PudMed:23144376]
(21) Roux V; Robert C; Gimenez G; Gharbi R; Raoult D (2012) Draft genome sequence of Actinomyces massiliensis strain 4401292T J Bacteriol 194(18):5121. [PudMed:22933754]
(22) Brouwer MS; Roberts AP; Mullany P; Allan E (2012) In silico analysis of sequenced strains of Clostridium difficile reveals a related set of conjugative transposons carrying a variety of accessory genes Mob Genet Elements 2(1):8-12. [PudMed:22754747]
(23) Dawes FE; Bulach DM; Kuzevski A; Bettelheim KA; Venturini C; Djordjevic SP; Walker MJ (2012) Molecular characterization of a 21.4 kilobase antibiotic resistance plasmid from an alpha-hemolytic Escherichia coli O108:H- human clinical isolate PLoS One 7(4):e34718. [PudMed:22532831]
(24) Lang KS; Danzeisen JL; Xu W; Johnson TJ (2012) Transcriptome mapping of pAR060302, a blaCMY-2-positive broad-host-range IncA/C plasmid Appl Environ Microbiol 78(9):3379-86. [PudMed:22344651]
(25) Ohtani N; Tomita M; Itaya M (2012) The third plasmid pVV8 from Thermus thermophilus HB8: isolation, characterization, and sequence determination Extremophiles 16(2):237-44. [PudMed:22212656]
(26) Gargis AS et al. (2010) Complete nucleotide sequences of plasmids pACK1 and pACK3 from Staphylococcus simulans biovar staphylolyticus. Plasmid. 64(2):104-9.. [PudMed:20493903]
(27) Jones BV et al. (2010) Comparative metagenomic analysis of plasmid encoded functions in the human gutmicrobiome. BMC Genomics 11:46. [PudMed:20085629]
(28) Rosvoll TC et al. (2010) PCR-based plasmid typing in Enterococcus faecium strains reveals widelydistributed pRE25-, pRUM-, pIP501- and pHTbeta-related replicons associated withglycopeptide resistance and stabilizing toxin-antitoxin systems. FEMS Immunol Med Microbiol 58(2):254-68. [PudMed:20015231]
(29) Lepka D et al. (2009) Adding to Yersinia enterocolitica gene pool diversity: two cryptic plasmids froma biotype 1A isolate. J Biomed Biotechnol 2009:398434. [PudMed:19834620]
(30) Fricke WF et al. (2009) Comparative genomics of the IncA/C multidrug resistance plasmid family. J Bacteriol 191(15):4750-7. [PudMed:19482926]
(31) Zhang W et al. (2008) Complete nucleotide sequence of plasmid plca36 isolated from Lactobacillus casei Zhang. Plasmid 60(2):131-5. [PudMed:18634821]
(32) Perichon B et al. (2008) Sequence of conjugative plasmid pIP1206 mediating resistance to aminoglycosidesby 16S rRNA methylation and to hydrophilic fluoroquinolones by efflux. Antimicrob Agents Chemother 52(7):2581-92. [PudMed:18458128]
(33) O'Connor EB et al. (2007) pEOC01: a plasmid from Pediococcus acidilactici which encodes an identicalstreptomycin resistance (aadE) gene to that found in Campylobacter jejuni. Plasmid 58(2):115-26. [PudMed:17395262]
(34) Fico S et al. (2006) TasA-tasB, a new putative toxin-antitoxin (TA) system from Bacillusthuringiensis pGI1 plasmid is a widely distributed composite mazE-doc TA system. BMC Genomics 7:259. [PudMed:17038198]
(35) Ogata H et al. (2005) Rickettsia felis, from culture to genome sequencing. Ann N Y Acad Sci 1063:26-34. [PudMed:16481487]
(36) Jiang Y et al. (2005) The complete sequence and analysis of the large virulence plasmid pSS ofShigella sonnei. Plasmid 54(2):149-59. [PudMed:16122562]
(37) Pomerantsev AP et al. (2001) Genetic organization of the Francisella plasmid pFNL10. Plasmid 46(3):210-22. [PudMed:11735370]